Strain identifier
BacDive ID: 2885
Type strain:
Species: Acidovorax delafieldii
Strain Designation: 133, FD-6
Strain history: CIP <- 1989, DSM <- Inst. Mikrobiol. Univ., Göttinger, Germany <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain 133, Pseudomonas delafieldii <- F. Delafield: strain FD-6
NCBI tax ID(s): 47920 (species)
General
@ref: 2047
BacDive-ID: 2885
DSM-Number: 64
keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen
description: Acidovorax delafieldii 133 is an obligate aerobe, mesophilic, Gram-negative human pathogen that was isolated from soil, enrichment with poly-ß-hydroxybutyrate.
NCBI tax id
- NCBI tax id: 47920
- Matching level: species
strain history
@ref | history |
---|---|
2047 | <- IMG <- R.Y. Stanier, 133 <- F. Delafield, FD-6 |
118877 | CIP <- 1989, DSM <- Inst. Mikrobiol. Univ., Göttinger, Germany <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain 133, Pseudomonas delafieldii <- F. Delafield: strain FD-6 |
doi: 10.13145/bacdive2885.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Acidovorax
- species: Acidovorax delafieldii
- full scientific name: Acidovorax delafieldii (Davis 1970) Willems et al. 1990
synonyms
- @ref: 20215
- synonym: Pseudomonas delafieldii
@ref: 2047
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Acidovorax
species: Acidovorax delafieldii
full scientific name: Acidovorax delafieldii (Davis 1970) Willems et al. 1990
strain designation: 133, FD-6
type strain: yes
Morphology
cell morphology
- @ref: 118877
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 118877
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2047 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
2047 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
40594 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
118877 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2047 | positive | growth | 30 | mesophilic |
40594 | positive | growth | 25 | mesophilic |
118877 | positive | growth | 5-37 | |
118877 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 118877
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
118877 | NaCl | positive | growth | 0-2 % |
118877 | NaCl | no | growth | 4 % |
118877 | NaCl | no | growth | 6 % |
118877 | NaCl | no | growth | 8 % |
118877 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
118877 | 16947 | citrate | - | carbon source |
118877 | 4853 | esculin | - | hydrolysis |
118877 | 17632 | nitrate | + | reduction |
118877 | 16301 | nitrite | - | reduction |
118877 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 118877
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
118877 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
118877 | oxidase | + | |
118877 | beta-galactosidase | - | 3.2.1.23 |
118877 | alcohol dehydrogenase | - | 1.1.1.1 |
118877 | gelatinase | - | |
118877 | amylase | - | |
118877 | DNase | - | |
118877 | caseinase | + | 3.4.21.50 |
118877 | catalase | + | 1.11.1.6 |
118877 | tween esterase | + | |
118877 | lecithinase | + | |
118877 | lipase | + | |
118877 | lysine decarboxylase | - | 4.1.1.18 |
118877 | ornithine decarboxylase | - | 4.1.1.17 |
118877 | protease | + | |
118877 | tryptophan deaminase | - | |
118877 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44419 C12:0 3.9 12 44419 C14:0 4.5 14 44419 C16:0 21.8 16 44419 C10:0 3OH 3.8 11.423 44419 C16:1 ω7c 47 15.819 44419 C18:1 ω7c /12t/9t 15.4 17.824 44419 C18:2 ω6,9c/C18:0 ANTE 2.8 17.724 44419 C8:0 3OH 0.9 9.385 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44419 | - | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
118877 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2047 | + | - | - | - | + | - | - | - | - | + | + | + | - | - | + | - | - | + | - | - | + |
44419 | + | - | - | - | - | - | - | - | + | + | + | + | - | - | + | - | - | + | - | - | + |
44419 | + | - | + | - | - | - | - | - | + | + | + | + | - | - | + | - | - | + | - | - | + |
2047 | + | - | - | - | - | - | - | - | + | + | + | + | - | - | + | - | - | + | - | - | + |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118877 | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | + | - | - | - | - | + | - | + | - | - | + | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | + | - | - | - | + | - | + | + | + | + | - | - | - | - | - | - | - | + | - | + | - | - | - | + | + | - | - | - | - | - | + | - | + | + | + | + | - | + | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2047 | soil, enrichment with poly-ß-hydroxybutyrate |
44419 | Soil,enrichment with PHB as sole carbon source |
118877 | Environment, Soil enriched with poly-b-hydroxybuty |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5115.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_491;97_560;98_1041;99_5115&stattab=map
- Last taxonomy: Acidovorax
- 16S sequence: AF078764
- Sequence Identity:
- Total samples: 1172
- soil counts: 75
- aquatic counts: 155
- animal counts: 38
- plant counts: 904
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
2047 | yes, in single cases | 1 | Risk group (German classification) |
118877 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Pseudomonas putida strain 133 16S ribosomal RNA gene, partial sequence | JQ795146 | 403 | ena | 303 |
20218 | Acidovorax delafieldii 16S ribosomal RNA gene, partial sequence | AF078764 | 1515 | ena | 47920 |
20218 | Acidovorax delafieldii 16S rRNA gene, strain DSM 50263 | AJ420323 | 1483 | ena | 47920 |
20218 | Acidovorax delafieldii strain LMG 5943 16S ribosomal RNA gene, partial sequence | EU024132 | 1318 | ena | 47920 |
GC content
- @ref: 2047
- GC-content: 64.8
External links
@ref: 2047
culture collection no.: CCUG 1779, LMG 5943, DSM 64, ATCC 17505, DSM 50263, DSM 50403, CIP 103303, NCIMB 11476
straininfo link
- @ref: 72408
- straininfo: 92080
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 2275854 | Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. | Willems A, Falsen E, Pot B, Jantzen E, Hoste B, Vandamme P, Gillis M, Kersters K, De Ley J | Int J Syst Bacteriol | 10.1099/00207713-40-4-384 | 1990 | Base Composition, Base Sequence, Chromatography, Gas, Cluster Analysis, DNA, Bacterial/analysis, Electrophoresis, Fatty Acids/analysis, Nucleic Acid Hybridization, Phenotype, Pseudomonas/*classification/genetics, Terminology as Topic | Enzymology |
Metabolism | 15812862 | Regulation of pyrimidine biosynthesis in Acidovorax delafieldii. | West TP | J Basic Microbiol | 10.1002/jobm.200410506 | 2005 | Comamonadaceae/genetics/*metabolism, Gene Expression Regulation, Bacterial, Glucose/metabolism, Orotate Phosphoribosyltransferase/genetics/metabolism, Orotic Acid/metabolism, Pyrimidines/*biosynthesis, Succinic Acid/metabolism | |
Phylogeny | 29616893 | Acidovorax kalamii sp. nov., isolated from a water sample of the river Ganges. | Pal D, Kaur N, Sudan SK, Bisht B, Krishnamurthi S, Mayilraj S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002736 | 2018 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, India, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2047 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 64) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-64 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40594 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15085 | ||||
44419 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 1779) | https://www.ccug.se/strain?id=1779 | |||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72408 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92080.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118877 | Curators of the CIP | Collection of Institut Pasteur (CIP 103303) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103303 |