Strain identifier

BacDive ID: 2882

Type strain: Yes

Species: Thalassotalea ganghwensis

Strain Designation: JC2041, JC 2041

Strain history: CIP <- 2004, DSMZ <- J. Chun: strain JC 2041

NCBI tax ID(s): 221989 (species)

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General

@ref: 5870

BacDive-ID: 2882

DSM-Number: 15355

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Thalassotalea ganghwensis JC2041 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment sample of getbol.

NCBI tax id

  • NCBI tax id: 221989
  • Matching level: species

strain history

@refhistory
5870<- J. Chun; JC2041
67771<- J Chon, Seoul Nat. Univ.
119530CIP <- 2004, DSMZ <- J. Chun: strain JC 2041

doi: 10.13145/bacdive2882.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Colwelliaceae
  • genus: Thalassotalea
  • species: Thalassotalea ganghwensis
  • full scientific name: Thalassotalea ganghwensis (Yi et al. 2004) Zhang et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Thalassomonas ganghwensis

@ref: 5870

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Colwelliaceae

genus: Thalassotalea

species: Thalassotalea ganghwensis

full scientific name: Thalassotalea ganghwensis (Yi et al. 2004) Zhang et al. 2014

strain designation: JC2041, JC 2041

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29962negative1.9 µm0.65 µmrod-shapedyes
67771negative
119530negativerod-shapedyes

pigmentation

  • @ref: 29962
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5870BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36404Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119530CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5870positivegrowth35mesophilic
29962positivegrowth15-40
29962positiveoptimum35mesophilic
36404positivegrowth30mesophilic
67771positivegrowth35mesophilic
119530positivegrowth15-30
119530nogrowth5psychrophilic
119530nogrowth10psychrophilic

culture pH

@refabilitytypepHPH range
29962positivegrowth07-11alkaliphile
29962positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29962aerobe
67771aerobe

spore formation

  • @ref: 29962
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29962NaClpositivegrowth01-08 %
29962NaClpositiveoptimum3 %
119530NaClpositivegrowth0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2996230089acetate+carbon source
2996222653asparagine+carbon source
2996228260galactose+carbon source
299625291gelatin+carbon source
2996217234glucose+carbon source
2996215428glycine+carbon source
2996230031succinate+carbon source
2996253426tween 80+carbon source
299624853esculin+hydrolysis
2996217632nitrate+reduction
1195304853esculin-hydrolysis
11953017632nitrate-reduction
11953016301nitrite-reduction
119530132112sodium thiosulfate-builds gas from

metabolite production

  • @ref: 119530
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29962acid phosphatase+3.1.3.2
29962alkaline phosphatase+3.1.3.1
29962catalase+1.11.1.6
29962cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119530oxidase+
119530beta-galactosidase+3.2.1.23
119530alcohol dehydrogenase-1.1.1.1
119530gelatinase+
119530caseinase+3.4.21.50
119530catalase+1.11.1.6
119530lecithinase-
119530lipase+
119530lysine decarboxylase-4.1.1.18
119530ornithine decarboxylase-4.1.1.17
119530protease-
119530tryptophan deaminase-
119530urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119530-+++-++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5870sediment sample of getbolGanghwa island of Korea
67771From a sediment sample of getbol, the Korean tidal flatRepublic of KoreaKORAsia
119530Environment, Sediment sample of getbolGanghwa IslandRepublic of KoreaKORAsia2002

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_78961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_2648;97_42177;98_55064;99_78961&stattab=map
  • Last taxonomy: Thalassotalea ganghwensis subclade
  • 16S sequence: AY194066
  • Sequence Identity:
  • Total samples: 721
  • soil counts: 10
  • aquatic counts: 634
  • animal counts: 77

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
58701Risk group (German classification)
1195301Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5870
  • description: Thalassomonas ganghwensis strain JC2041 16S ribosomal RNA gene, partial sequence
  • accession: AY194066
  • length: 1462
  • database: ena
  • NCBI tax ID: 221989

GC content

  • @ref: 5870
  • GC-content: 42

External links

@ref: 5870

culture collection no.: DSM 15355, IMSNU 14005, KCTC 12041, CIP 108416

straininfo link

  • @ref: 72405
  • straininfo: 97673

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15023946Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment.Yi H, Bae KS, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.02748-02004Alteromonadaceae/*classification/genetics/growth & development/isolation & purification, Base Composition, DNA, Bacterial/chemistry, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Phylogeny, Water MicrobiologyGenetics
Phylogeny21131503Thalassomonas agariperforans sp. nov., an agarolytic bacterium isolated from marine sand.Park S, Choi WC, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.027821-02010Agar/metabolism, Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolismMetabolism
Phylogeny24421274Description of Thalassotalea piscium gen. nov., sp. nov., isolated from flounder (Paralichthys olivaceus), reclassification of four species of the genus Thalassomonas as members of the genus Thalassotalea gen. nov. and emended description of the genus Thalassomonas.Zhang Y, Tang K, Shi X, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.055913-02014Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flounder/*microbiology, Gammaproteobacteria/*classification/genetics/isolation & purification, Gills/microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny26846286Thalassotalea sediminis sp. nov., isolated from coastal sediment.Xu ZX, Lu DC, Liang QY, Chen GJ, Du ZJAntonie Van Leeuwenhoek10.1007/s10482-015-0639-42016Bacterial Typing Techniques, Base Composition, Gammaproteobacteria/chemistry/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny29143729Thalassotalea coralli sp. nov., isolated from the torch coral Euphyllia glabrescens.Sheu DS, Sheu SY, Xie PB, Tang SL, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0024782017Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Hydroxybutyrates, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, Polyesters, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
5870Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15355)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15355
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29962Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2633128776041
36404Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6036
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72405Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID97673.1StrainInfo: A central database for resolving microbial strain identifiers
119530Curators of the CIPCollection of Institut Pasteur (CIP 108416)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108416