Strain identifier

BacDive ID: 2876

Type strain: Yes

Species: Colwellia maris

Strain Designation: ABE-1

Strain history: CIP <- 2000, JCM <- I. Yumoto: strain ABE-1

NCBI tax ID(s): 77524 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6168

BacDive-ID: 2876

DSM-Number: 16033

keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Colwellia maris ABE-1 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater off Okhotsuku Sea.

NCBI tax id

  • NCBI tax id: 77524
  • Matching level: species

strain history

@refhistory
6168<- JCM/RIKEN <- I. Yumoto, Hokkaido Natl. Industrial Res. Inst., Sapporo, Japan; ABE-1
67770I. Yumoto ABE-1.
120821CIP <- 2000, JCM <- I. Yumoto: strain ABE-1

doi: 10.13145/bacdive2876.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Colwelliaceae
  • genus: Colwellia
  • species: Colwellia maris
  • full scientific name: Colwellia maris Yumoto et al. 1998

@ref: 6168

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Colwelliaceae

genus: Colwellia

species: Colwellia maris

full scientific name: Colwellia maris Yumoto et al. 1998

strain designation: ABE-1

type strain: yes

Morphology

cell morphology

  • @ref: 120821
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6168PYSE MEDIUM (DSMZ Medium 1120)yeshttps://mediadive.dsmz.de/medium/1120Name: PYSE MEDIUM (DSMZ Medium 1120) Composition: NaCl 15.0 g/l Peptone 8.0 g/l MgCl2 x 6 H2O 5.4 g/l Yeast extract 3.0 g/l MgSO4 x 7 H2O 2.65 g/l CaSO4 x 2 H2O 0.65 g/l KCl 0.35 g/l Distilled water
39534Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120821CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6168positivegrowth15psychrophilic
39534positivegrowth10psychrophilic
67770positivegrowth15psychrophilic
120821positivegrowth5-18psychrophilic
120821nogrowth25mesophilic
120821nogrowth30mesophilic
120821nogrowth37mesophilic
120821nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120821
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120821NaClpositivegrowth2-4 %
120821NaClnogrowth0 %
120821NaClnogrowth8 %
120821NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12082117632nitrate+reduction
12082116301nitrite+reduction
12082117632nitrate+respiration

metabolite production

  • @ref: 120821
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12082115688acetoin-
12082117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120821oxidase+
120821beta-galactosidase-3.2.1.23
120821alcohol dehydrogenase-1.1.1.1
120821gelatinase+/-
120821amylase-
120821caseinase-3.4.21.50
120821catalase+1.11.1.6
120821tween esterase+
120821gamma-glutamyltransferase-2.3.2.2
120821lecithinase-
120821lipase-
120821lysine decarboxylase-4.1.1.18
120821ornithine decarboxylase-4.1.1.17
120821phenylalanine ammonia-lyase-4.3.1.24
120821protease-
120821tryptophan deaminase-
120821urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120821-+++-++-+-++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
6168seawater off Okhotsuku SeaHokkaido, Abashiri coast (44° 3' N, 144° 16' E)JapanJPNAsia44.05144.267
67770SeawaterAbashiri, HokkaidoJapanJPNAsia
120821Environment, Sea waterAbashiri, HokkaidoJapanJPNAsia1977

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_79948.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_195;97_212;98_1302;99_79948&stattab=map
  • Last taxonomy: Colwellia maris
  • 16S sequence: AB002630
  • Sequence Identity:
  • Total samples: 49
  • aquatic counts: 46
  • animal counts: 2
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61681Risk group (German classification)
1208211Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6168
  • description: Colwellia maris gene for 16S rRNA, partial sequence
  • accession: AB002630
  • length: 1514
  • database: ena
  • NCBI tax ID: 77524

GC content

  • @ref: 6168
  • GC-content: 39.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6168

culture collection no.: DSM 16033, CIP 106458, JCM 10085

straininfo link

  • @ref: 72400
  • straininfo: 67948

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9828437Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium.Yumoto I, Kawasaki K, Iwata H, Matsuyama H, Okuyama HInt J Syst Bacteriol10.1099/00207713-48-4-13571998Base Composition, Base Sequence, Cold Temperature, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Terminology as Topic, Vibrio/*classification/*isolation & purification/physiology/ultrastructureGenetics
Phylogeny27902293Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench.Kusube M, Kyaw TS, Tanikawa K, Chastain RA, Hardy KM, Cameron J, Bartlett DHInt J Syst Evol Microbiol10.1099/ijsem.0.0016712017Alteromonadaceae/*classification/genetics/isolation & purification, Amphipoda/*microbiology, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Hydrostatic Pressure, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
6168Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16033)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16033
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39534Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18591
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72400Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID67948.1StrainInfo: A central database for resolving microbial strain identifiers
120821Curators of the CIPCollection of Institut Pasteur (CIP 106458)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106458