Strain identifier
BacDive ID: 2876
Type strain:
Species: Colwellia maris
Strain Designation: ABE-1
Strain history: CIP <- 2000, JCM <- I. Yumoto: strain ABE-1
NCBI tax ID(s): 77524 (species)
General
@ref: 6168
BacDive-ID: 2876
DSM-Number: 16033
keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, motile, rod-shaped
description: Colwellia maris ABE-1 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater off Okhotsuku Sea.
NCBI tax id
- NCBI tax id: 77524
- Matching level: species
strain history
@ref | history |
---|---|
6168 | <- JCM/RIKEN <- I. Yumoto, Hokkaido Natl. Industrial Res. Inst., Sapporo, Japan; ABE-1 |
67770 | I. Yumoto ABE-1. |
120821 | CIP <- 2000, JCM <- I. Yumoto: strain ABE-1 |
doi: 10.13145/bacdive2876.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Colwelliaceae
- genus: Colwellia
- species: Colwellia maris
- full scientific name: Colwellia maris Yumoto et al. 1998
@ref: 6168
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Colwelliaceae
genus: Colwellia
species: Colwellia maris
full scientific name: Colwellia maris Yumoto et al. 1998
strain designation: ABE-1
type strain: yes
Morphology
cell morphology
- @ref: 120821
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6168 | PYSE MEDIUM (DSMZ Medium 1120) | yes | https://mediadive.dsmz.de/medium/1120 | Name: PYSE MEDIUM (DSMZ Medium 1120) Composition: NaCl 15.0 g/l Peptone 8.0 g/l MgCl2 x 6 H2O 5.4 g/l Yeast extract 3.0 g/l MgSO4 x 7 H2O 2.65 g/l CaSO4 x 2 H2O 0.65 g/l KCl 0.35 g/l Distilled water |
39534 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
120821 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6168 | positive | growth | 15 | psychrophilic |
39534 | positive | growth | 10 | psychrophilic |
67770 | positive | growth | 15 | psychrophilic |
120821 | positive | growth | 5-18 | psychrophilic |
120821 | no | growth | 25 | mesophilic |
120821 | no | growth | 30 | mesophilic |
120821 | no | growth | 37 | mesophilic |
120821 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 120821
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
120821 | NaCl | positive | growth | 2-4 % |
120821 | NaCl | no | growth | 0 % |
120821 | NaCl | no | growth | 8 % |
120821 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
120821 | 17632 | nitrate | + | reduction |
120821 | 16301 | nitrite | + | reduction |
120821 | 17632 | nitrate | + | respiration |
metabolite production
- @ref: 120821
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
120821 | 15688 | acetoin | - | |
120821 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
120821 | oxidase | + | |
120821 | beta-galactosidase | - | 3.2.1.23 |
120821 | alcohol dehydrogenase | - | 1.1.1.1 |
120821 | gelatinase | +/- | |
120821 | amylase | - | |
120821 | caseinase | - | 3.4.21.50 |
120821 | catalase | + | 1.11.1.6 |
120821 | tween esterase | + | |
120821 | gamma-glutamyltransferase | - | 2.3.2.2 |
120821 | lecithinase | - | |
120821 | lipase | - | |
120821 | lysine decarboxylase | - | 4.1.1.18 |
120821 | ornithine decarboxylase | - | 4.1.1.17 |
120821 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120821 | protease | - | |
120821 | tryptophan deaminase | - | |
120821 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120821 | - | + | + | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | isolation date |
---|---|---|---|---|---|---|---|---|
6168 | seawater off Okhotsuku Sea | Hokkaido, Abashiri coast (44° 3' N, 144° 16' E) | Japan | JPN | Asia | 44.05 | 144.267 | |
67770 | Seawater | Abashiri, Hokkaido | Japan | JPN | Asia | |||
120821 | Environment, Sea water | Abashiri, Hokkaido | Japan | JPN | Asia | 1977 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_79948.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_195;97_212;98_1302;99_79948&stattab=map
- Last taxonomy: Colwellia maris
- 16S sequence: AB002630
- Sequence Identity:
- Total samples: 49
- aquatic counts: 46
- animal counts: 2
- plant counts: 1
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6168 | 1 | Risk group (German classification) |
120821 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6168
- description: Colwellia maris gene for 16S rRNA, partial sequence
- accession: AB002630
- length: 1514
- database: ena
- NCBI tax ID: 77524
GC content
- @ref: 6168
- GC-content: 39.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 6168
culture collection no.: DSM 16033, CIP 106458, JCM 10085
straininfo link
- @ref: 72400
- straininfo: 67948
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9828437 | Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium. | Yumoto I, Kawasaki K, Iwata H, Matsuyama H, Okuyama H | Int J Syst Bacteriol | 10.1099/00207713-48-4-1357 | 1998 | Base Composition, Base Sequence, Cold Temperature, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Terminology as Topic, Vibrio/*classification/*isolation & purification/physiology/ultrastructure | Genetics |
Phylogeny | 27902293 | Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench. | Kusube M, Kyaw TS, Tanikawa K, Chastain RA, Hardy KM, Cameron J, Bartlett DH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001671 | 2017 | Alteromonadaceae/*classification/genetics/isolation & purification, Amphipoda/*microbiology, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Hydrostatic Pressure, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6168 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16033) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16033 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39534 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18591 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
72400 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID67948.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
120821 | Curators of the CIP | Collection of Institut Pasteur (CIP 106458) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106458 |