Strain identifier

BacDive ID: 2869

Type strain: Yes

Species: Clostridiisalibacter paucivorans

Strain Designation: 37HS60

Strain history: P.-P. Liebgott 37HS60.

NCBI tax ID(s): 1121289 (strain), 408753 (species)

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General

@ref: 16150

BacDive-ID: 2869

DSM-Number: 22131

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, Gram-positive, motile, rod-shaped

description: Clostridiisalibacter paucivorans 37HS60 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from mud of olive mill wastewater evaporation pond.

NCBI tax id

NCBI tax idMatching level
1121289strain
408753species

strain history

@refhistory
16150<- T. Itoh, JCM/RIKEN <- P. P. Liebgott, Microbiologie et Biotechnologie des Environnements Chauds, IRD, Marseille, France; 37HS60
67770P.-P. Liebgott 37HS60.

doi: 10.13145/bacdive2869.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridiisalibacter
  • species: Clostridiisalibacter paucivorans
  • full scientific name: Clostridiisalibacter paucivorans Liebgott et al. 2008

@ref: 16150

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridiisalibacter

species: Clostridiisalibacter paucivorans

full scientific name: Clostridiisalibacter paucivorans Liebgott et al. 2008

strain designation: 37HS60

type strain: yes

Morphology

cell morphology

  • @ref: 32243
  • gram stain: positive
  • cell length: 5.5 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 60034
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 16150
  • name: MARINITOGA MEDIUM (DSMZ Medium 904)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/904
  • composition: Name: MARINITOGA MEDIUM (DSMZ Medium 904) Composition: Sea Salt 30.0 g/l PIPES 6.0 g/l D-Glucose 2.5 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperature
16150positivegrowth40
32243positivegrowth20-50
32243positiveoptimum42
60034positivegrowth37
67770positivegrowth40

culture pH

@refabilitytypepHPH range
32243positivegrowth5.5-8.5alkaliphile
32243positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
16150anaerobe
32243anaerobe
60034anaerobe
125439anaerobe100

spore formation

  • @ref: 32243
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3224315361pyruvate+carbon source
3224330031succinate+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16150mud of olive mill wastewater evaporation pondMarrakeshMoroccoMARAfrica
60034Wastewater,olive millMarrakeshMoroccoMARAfrica2005-03-15
67770Olive mill wastewater evaporation pond located in MarrakeshMoroccoMARAfrica

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Industrial wastewater
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_117873.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_46645;97_59887;98_79562;99_117873&stattab=map
  • Last taxonomy: Clostridiisalibacter paucivorans subclade
  • 16S sequence: EF026082
  • Sequence Identity:
  • Total samples: 303
  • soil counts: 45
  • aquatic counts: 135
  • animal counts: 107
  • plant counts: 16

Safety information

risk assessment

  • @ref: 16150
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16150
  • description: Clostridiisalibacter paucivorans strain 37HS60 16S ribosomal RNA gene, partial sequence
  • accession: EF026082
  • length: 1434
  • database: nuccore
  • NCBI tax ID: 408753

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridiisalibacter paucivorans DSM 221311121289.3wgspatric1121289
66792Clostridiisalibacter paucivorans DSM 221312556921093draftimg1121289
67770Clostridiisalibacter paucivorans DSM 22131GCA_000620125scaffoldncbi1121289

GC content

@refGC-contentmethod
1615033.0
3224333
6777033high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes56.267no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes89.806yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes66.765no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.457no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno68.997no
125438motile2+flagellatedAbility to perform flagellated movementyes80.962no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes85.6
125439BacteriaNetmotilityAbility to perform movementyes78.5
125439BacteriaNetgram_stainReaction to gram-stainingvariable70
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe100

External links

@ref: 16150

culture collection no.: DSM 22131, CCUG 53849, JCM 14354

straininfo link

  • @ref: 72393
  • straininfo: 402963

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18175684Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater.Liebgott PP, Joseph M, Fardeau ML, Cayol JL, Falsen E, Chamkh F, Qatibi AI, Labat MInt J Syst Evol Microbiol10.1099/ijs.0.65182-02008Anaerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Bacteria/chemistry/*classification/genetics/*isolation & purification, *Industrial Waste, Molecular Sequence Data, Morocco, *Olea, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Species Specificity, Waste Disposal, Fluid/methods, *Water MicrobiologyGenetics
Phylogeny20173012Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil.Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat MInt J Syst Evol Microbiol10.1099/ijs.0.017715-02010Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Soil Pollutants, Temperature, TunisiaGenetics
Phylogeny22307504Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater.Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XFInt J Syst Evol Microbiol10.1099/ijs.0.034660-02012Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, *Food-Processing Industry, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Water/*microbiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16150Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22131)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22131
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32243Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2848428776041
60034Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53849)https://www.ccug.se/strain?id=53849
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72393Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402963.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1