Strain identifier

BacDive ID: 2868

Type strain: Yes

Species: Anaerosporobacter mobilis

Strain Designation: HY-37-4

Strain history: <- J Chun, Seoul National Unoversity, Korea

NCBI tax ID(s): 1120996 (strain), 264463 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6191

BacDive-ID: 2868

DSM-Number: 15930

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Anaerosporobacter mobilis HY-37-4 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.

NCBI tax id

NCBI tax idMatching level
1120996strain
264463species

strain history

@refhistory
6191<- J. Chun, Seoul Natl. Univ., Republic of Korea; HY-37-4 <- J. Chun {2003}
67771<- J Chun, Seoul National Unoversity, Korea

doi: 10.13145/bacdive2868.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Anaerosporobacter
  • species: Anaerosporobacter mobilis
  • full scientific name: Anaerosporobacter mobilis Jeong et al. 2007

@ref: 6191

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Anaerosporobacter

species: Anaerosporobacter mobilis

full scientific name: Anaerosporobacter mobilis Jeong et al. 2007

strain designation: HY-37-4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
31315positive2.3-5.5 µm0.5-0.5 µmrod-shapedyes
67771rod-shapedyesperitrichous
67771positive
69480positive100

Culture and growth conditions

culture medium

  • @ref: 6191
  • name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104c
  • composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6191positivegrowth30mesophilic
31315positivegrowth15-40
31315positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31315positivegrowth5.5-9.0alkaliphile
31315positiveoptimum6.75

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6191anaerobe
31315anaerobe
67771anaerobe
69480anaerobe99.242

spore formation

@refspore formationtype of sporeconfidence
31315yes
67771yesendospore
69481yes100

halophily

@refsaltgrowthtested relationconcentration
31315NaClpositivegrowth0-3 %
31315NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3131522599arabinose+carbon source
3131517057cellobiose+carbon source
3131528757fructose+carbon source
3131528260galactose+carbon source
3131517234glucose+carbon source
3131517716lactose+carbon source
3131517306maltose+carbon source
3131537684mannose+carbon source
3131516634raffinose+carbon source
3131517814salicin+carbon source
3131517992sucrose+carbon source
3131518222xylose+carbon source
313154853esculin+hydrolysis

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6191forest soilJejuRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 6191
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6191
  • description: Anaerosporobacter mobilis strain IMSNU 40011 16S ribosomal RNA gene, partial sequence
  • accession: AY534872
  • length: 1442
  • database: ena
  • NCBI tax ID: 264463

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerosporobacter mobilis DSM 15930GCA_900142955scaffoldncbi1120996
66792Anaerosporobacter mobilis DSM 159301120996.3wgspatric1120996
66792Anaerosporobacter mobilis DSM 159302588253509draftimg1120996

GC content

@refGC-content
619141
6777141.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes88.299yes
flagellatedyes63.929no
gram-positiveyes88.837yes
anaerobicyes97.252yes
aerobicno95.477yes
halophileno92.896yes
spore-formingyes94.384yes
thermophileno99.584yes
glucose-utilyes90.826yes
glucose-fermentyes69.09no

External links

@ref: 6191

culture collection no.: DSM 15930, IMSNU 40011, KCTC 5027

straininfo link

  • @ref: 72392
  • straininfo: 389493

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17684257Anaerosporobacter mobilis gen. nov., sp. nov., isolated from forest soil.Jeong H, Lim YW, Yi H, Sekiguchi Y, Kamagata Y, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.63283-02007Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, TreesGenetics
Phylogeny26755447Mobilisporobacter senegalensis gen. nov., sp. nov., an anaerobic bacterium isolated from tropical shea cake.Mbengue M, Thioye A, Labat M, Casalot L, Joseph M, Samb A, Ben Ali Gam ZInt J Syst Evol Microbiol10.1099/ijsem.0.0008892016

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6191Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15930)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15930
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31315Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2763028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72392Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389493.1StrainInfo: A central database for resolving microbial strain identifiers