Strain identifier
BacDive ID: 2866
Type strain:
Species: Thermohalobacter berrensis
Strain history: <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; CTT3 <- J.-L. Cayol {1998}
NCBI tax ID(s): 99594 (species)
General
@ref: 18273
BacDive-ID: 2866
DSM-Number: 26700
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Thermohalobacter berrensis DSM 26700 is an anaerobe, thermophilic bacterium that was isolated from solar saltern.
NCBI tax id
- NCBI tax id: 99594
- Matching level: species
strain history
- @ref: 18273
- history: <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; CTT3 <- J.-L. Cayol {1998}
doi: 10.13145/bacdive2866.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Thermohalobacter
- species: Thermohalobacter berrensis
- full scientific name: Thermohalobacter berrensis Cayol et al. 2000
@ref: 18273
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Thermohalobacter
species: Thermohalobacter berrensis
full scientific name: Thermohalobacter berrensis Cayol et al. 2000
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18273
- name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1459
- composition: Name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459) Composition: D-Glucose 10.0 g/l KCl 4.0 g/l NaHCO3 2.5 g/l MgCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l Trypticase peptone 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Na-acetate 0.5 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l NH4Cl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0028 g/l CoCl2 x 6 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l AlK(SO4)2 x 12 H2O 0.00018 g/l Na2SeO4 0.0001 g/l Na2WO4 x 2 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Distilled water
culture temp
- @ref: 18273
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 18273
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 18273
- sample type: solar saltern
- geographic location: near Berre Lagoon
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_19847.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_10104;97_12189;98_14998;99_19847&stattab=map
- Last taxonomy: Thermohalobacter berrensis subclade
- 16S sequence: AF113543
- Sequence Identity:
- Total samples: 451
- soil counts: 72
- aquatic counts: 100
- animal counts: 271
- plant counts: 8
Safety information
risk assessment
- @ref: 18273
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18273
- description: Thermohalobacter berrensis 16S ribosomal RNA gene, complete sequence
- accession: AF113543
- length: 1521
- database: ena
- NCBI tax ID: 99594
GC content
- @ref: 18273
- GC-content: 45.8
External links
@ref: 18273
culture collection no.: DSM 26700, CNCM 105955, CTT 3
straininfo link
- @ref: 72390
- straininfo: 401073
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10758861 | Thermohalobacter berrensis gen. nov., sp. nov., a thermophilic, strictly halophilic bacterium from a solar saltern. | Cayol JL, Ducerf S, Patel BK, Garcia JL, Thomas P, Ollivier B | Int J Syst Evol Microbiol | 10.1099/00207713-50-2-559 | 2000 | Base Composition, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/cytology/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride/pharmacology, Temperature | Cultivation |
Phylogeny | 20173012 | Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil. | Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat M | Int J Syst Evol Microbiol | 10.1099/ijs.0.017715-0 | 2010 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Soil Pollutants, Temperature, Tunisia | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
18273 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26700) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26700 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72390 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401073.1 | StrainInfo: A central database for resolving microbial strain identifiers |