Strain identifier

BacDive ID: 2866

Type strain: Yes

Species: Thermohalobacter berrensis

Strain history: <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; CTT3 <- J.-L. Cayol {1998}

NCBI tax ID(s): 99594 (species)

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General

@ref: 18273

BacDive-ID: 2866

DSM-Number: 26700

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Thermohalobacter berrensis DSM 26700 is an anaerobe, thermophilic bacterium that was isolated from solar saltern.

NCBI tax id

  • NCBI tax id: 99594
  • Matching level: species

strain history

  • @ref: 18273
  • history: <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; CTT3 <- J.-L. Cayol {1998}

doi: 10.13145/bacdive2866.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Thermohalobacter
  • species: Thermohalobacter berrensis
  • full scientific name: Thermohalobacter berrensis Cayol et al. 2000

@ref: 18273

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Thermohalobacter

species: Thermohalobacter berrensis

full scientific name: Thermohalobacter berrensis Cayol et al. 2000

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 18273
  • name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1459
  • composition: Name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459) Composition: D-Glucose 10.0 g/l KCl 4.0 g/l NaHCO3 2.5 g/l MgCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l Trypticase peptone 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Na-acetate 0.5 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l NH4Cl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0028 g/l CoCl2 x 6 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l AlK(SO4)2 x 12 H2O 0.00018 g/l Na2SeO4 0.0001 g/l Na2WO4 x 2 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Distilled water

culture temp

  • @ref: 18273
  • growth: positive
  • type: growth
  • temperature: 65
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 18273
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 18273
  • sample type: solar saltern
  • geographic location: near Berre Lagoon
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_19847.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_10104;97_12189;98_14998;99_19847&stattab=map
  • Last taxonomy: Thermohalobacter berrensis subclade
  • 16S sequence: AF113543
  • Sequence Identity:
  • Total samples: 451
  • soil counts: 72
  • aquatic counts: 100
  • animal counts: 271
  • plant counts: 8

Safety information

risk assessment

  • @ref: 18273
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18273
  • description: Thermohalobacter berrensis 16S ribosomal RNA gene, complete sequence
  • accession: AF113543
  • length: 1521
  • database: ena
  • NCBI tax ID: 99594

GC content

  • @ref: 18273
  • GC-content: 45.8

External links

@ref: 18273

culture collection no.: DSM 26700, CNCM 105955, CTT 3

straininfo link

  • @ref: 72390
  • straininfo: 401073

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10758861Thermohalobacter berrensis gen. nov., sp. nov., a thermophilic, strictly halophilic bacterium from a solar saltern.Cayol JL, Ducerf S, Patel BK, Garcia JL, Thomas P, Ollivier BInt J Syst Evol Microbiol10.1099/00207713-50-2-5592000Base Composition, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/cytology/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride/pharmacology, TemperatureCultivation
Phylogeny20173012Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil.Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat MInt J Syst Evol Microbiol10.1099/ijs.0.017715-02010Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Soil Pollutants, Temperature, TunisiaGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18273Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26700)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26700
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72390Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401073.1StrainInfo: A central database for resolving microbial strain identifiers