Strain identifier
BacDive ID: 2860
Type strain: 
Species: Tindallia magadiensis
Strain Designation: Z-7934
Strain history: <- T.N. Zhilina, Inst. of Microbiology, Moscow, Russia
NCBI tax ID(s): 69895 (species)
version 8.1 (current version)
General
@ref: 3903
BacDive-ID: 2860
DSM-Number: 10318
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Tindallia magadiensis Z-7934 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from soda deposits.
NCBI tax id
- NCBI tax id: 69895
- Matching level: species
strain history
- @ref: 3903
- history: <- T.N. Zhilina, Inst. of Microbiology, Moscow, Russia
doi: 10.13145/bacdive2860.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Tindallia
- species: Tindallia magadiensis
- full scientific name: Tindallia magadiensis corrig. Kevbrin et al. 1999
synonyms
- @ref: 20215
- synonym: Tindallia magadii
@ref: 3903
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Tindallia
species: Tindallia magadiensis
full scientific name: Tindallia magadiensis Kevbrin et al. 1999
strain designation: Z-7934
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.637
Culture and growth conditions
culture medium
- @ref: 3903
- name: TINDALLIA MEDIUM (DSMZ Medium 798)
- growth: yes
- link: https://mediadive.dsmz.de/medium/798
- composition: Name: TINDALLIA MEDIUM (DSMZ Medium 798) Composition: NaCl 10.0 g/l Na2CO3 8.0 g/l Yeast extract 4.0 g/l Na2S x 9 H2O 0.5 g/l NH4Cl 0.5 g/l KCl 0.2 g/l K2HPO4 0.2 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l (DL)-alpha-Lipoic acid 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Calcium D-(+)-pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Thiamine HCl 5e-06 g/l Riboflavin 5e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Folic acid 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water
culture temp
- @ref: 3903
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 3903 | anaerobe | |
| 69480 | anaerobe | 99.998 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.329
Isolation, sampling and environmental information
isolation
- @ref: 3903
- sample type: soda deposits
- geographic location: Lake Magadi
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
- Cat1: #Condition
- Cat2: #Alkaline
taxonmaps
- @ref: 69479
- File name: preview.99_74998.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1869;96_8070;97_40244;98_52439;99_74998&stattab=map
- Last taxonomy: Tindallia
- 16S sequence: Y15626
- Sequence Identity:
- Total samples: 46
- soil counts: 4
- aquatic counts: 37
- animal counts: 4
- plant counts: 1
Safety information
risk assessment
- @ref: 3903
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3903
- description: Tindallia magadii 16S rRNA gene, partial
- accession: Y15626
- length: 1482
- database: ena
- NCBI tax ID: 69895
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tindallia magadiensis Z-7934 | GCA_900113635 | scaffold | ncbi | 69895 |
| 66792 | Tindallia magadiensis Z-7934 | 2651870112 | draft | img | 69895 |
GC content
- @ref: 3903
- GC-content: 37.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 77 | no |
| motile | yes | 82.892 | no |
| flagellated | no | 70.217 | no |
| gram-positive | no | 50 | no |
| anaerobic | yes | 99.494 | yes |
| aerobic | no | 98.043 | yes |
| halophile | no | 82.317 | no |
| spore-forming | yes | 67.888 | no |
| glucose-ferment | no | 51.479 | no |
| thermophile | no | 69.318 | no |
| glucose-util | yes | 80.265 | no |
External links
@ref: 3903
culture collection no.: DSM 10318
straininfo link
- @ref: 72384
- straininfo: 48811
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9662608 | Tindallia magadii gen. nov., sp. nov.: an alkaliphilic anaerobic ammonifier from soda lake deposits. | Kevbrin VV, Zhilina TN, Rainey FA, Zavarzin GA | Curr Microbiol | 10.1007/s002849900345 | 1998 | Alkalies/*metabolism, Ammonia/*metabolism, Bacteria, Anaerobic/*classification/cytology/genetics, Cell Division/physiology, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Microscopy, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis/genetics, RNA, Ribosomal, 16S/genetics, *Water Microbiology | Metabolism |
| Phylogeny | 12728359 | Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California. | Pikuta EV, Hoover RB, Bej AK, Marsic D, Detkova EN, Whitman WB, Krader P | Extremophiles | 10.1007/s00792-003-0326-7 | 2003 | Animals, Anti-Bacterial Agents/pharmacology, Bacteria, Anaerobic/*classification/cytology/isolation & purification/*physiology, California, Culture Media, DNA, Bacterial/chemistry/genetics, Fresh Water/*microbiology, Genes, rRNA, Genome, Bacterial, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Rods/*classification/cytology/isolation & purification/*physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism/pharmacology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3903 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10318) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10318 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72384 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48811.1 | StrainInfo: A central database for resolving microbial strain identifiers |