Strain identifier

BacDive ID: 2844

Type strain: Yes

Species: Enterocloster aldenensis

Strain history: <- CCUG <- D. M. Citron; RMA 9741

NCBI tax ID(s): 358742 (species)

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General

@ref: 7911

BacDive-ID: 2844

DSM-Number: 19262

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Enterocloster aldenensis ATCC BAA 1318 is an anaerobe, mesophilic bacterium that was isolated from human.

NCBI tax id

  • NCBI tax id: 358742
  • Matching level: species

strain history

  • @ref: 7911
  • history: <- CCUG <- D. M. Citron; RMA 9741

doi: 10.13145/bacdive2844.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Enterocloster
  • species: Enterocloster aldenensis
  • full scientific name: Enterocloster aldenensis corrig. (Warren et al. 2007) Haas and Blanchard 2020

  • synonyms

    @refsynonym
    20215Enterocloster aldensis
    20215Clostridium aldenense

@ref: 7911

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Enterocloster

species: Enterocloster aldenensis

full scientific name: Enterocloster aldenensis (Warren et al. 2007) Haas and Blanchard 2020

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7911CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
7911FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
7911COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
7911positivegrowth37mesophilic
59464positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7911anaerobe
59464anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
7911---+---+-------+-------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7911humanCaliforniaUSAUSANorth America
59464Human abdominal fluid

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_13074.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_3211;97_3941;98_7770;99_13074&stattab=map
  • Last taxonomy: Lachnospiraceae
  • 16S sequence: DQ279736
  • Sequence Identity:
  • Total samples: 16320
  • soil counts: 82
  • aquatic counts: 218
  • animal counts: 16005
  • plant counts: 15

Safety information

risk assessment

  • @ref: 7911
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7911
  • description: Clostridium aldenense strain RMA 9741 16S ribosomal RNA gene, partial sequence
  • accession: DQ279736
  • length: 1395
  • database: ena
  • NCBI tax ID: 358742

External links

@ref: 7911

culture collection no.: ATCC BAA 1318, DSM 19262, CCUG 52204, RMA 9741

straininfo link

  • @ref: 72368
  • straininfo: 298307

literature

  • topic: Phylogeny
  • Pubmed-ID: 16825358
  • title: Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections.
  • authors: Warren YA, Tyrrell KL, Citron DM, Goldstein EJ
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.00116-06
  • year: 2006
  • mesh: Bacterial Proteins/analysis, Bacterial Typing Techniques, Clostridium/*classification/cytology/*isolation & purification/physiology, Clostridium Infections/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enzymes/analysis, Genes, rRNA, Humans, Indoles/metabolism, Microscopy, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
7911Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19262)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19262
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
59464Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52204)https://www.ccug.se/strain?id=52204
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72368Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID298307.1StrainInfo: A central database for resolving microbial strain identifiers