Strain identifier

BacDive ID: 2843

Type strain: Yes

Species: Enterocloster citroniae

Strain history: <- CCUG <- D. M. Citron; RMA 16102

NCBI tax ID(s): 358743 (species)

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General

@ref: 7910

BacDive-ID: 2843

DSM-Number: 19261

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Enterocloster citroniae DSM 19261 is an anaerobe, mesophilic bacterium that was isolated from human.

NCBI tax id

  • NCBI tax id: 358743
  • Matching level: species

strain history

  • @ref: 7910
  • history: <- CCUG <- D. M. Citron; RMA 16102

doi: 10.13145/bacdive2843.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Enterocloster
  • species: Enterocloster citroniae
  • full scientific name: Enterocloster citroniae (Warren et al. 2007) Haas and Blanchard 2020

  • synonyms

    • @ref: 20215
    • synonym: Clostridium citroniae

@ref: 7910

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Enterocloster

species: Enterocloster citroniae

full scientific name: Enterocloster citroniae (Warren et al. 2007) Haas and Blanchard 2020

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7910
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
7910positivegrowth37mesophilic
59463positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7910anaerobe
59463anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose+builds acid from
6836762345L-rhamnose+builds acid from
6836730911sorbitol+builds acid from
6836716634raffinose+builds acid from
683676731melezitose+builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose+builds acid from
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source

metabolite production

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68367catalase+1.11.1.6
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECAT
7910--++++++++---++++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
7910humanCaliforniaUSAUSANorth America36.7783-119.418
59463Human peritoneal fluid

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_2310.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_176;97_190;98_1802;99_2310&stattab=map
  • Last taxonomy: Enterocloster citroniae subclade
  • 16S sequence: DQ279737
  • Sequence Identity:
  • Total samples: 25537
  • soil counts: 37
  • aquatic counts: 226
  • animal counts: 25228
  • plant counts: 46

Safety information

risk assessment

  • @ref: 7910
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium citroniae strain DSM 19261 16S ribosomal RNA gene, partial sequenceHM245936839ena358743
7910Clostridium citroniae strain RMA 16102 16S ribosomal RNA gene, partial sequenceDQ2797371420ena358743

Genome sequences

  • @ref: 66792
  • description: Clostridium citroniae DSM 19261
  • accession: 2928404274
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1485

External links

@ref: 7910

culture collection no.: DSM 19261, CCUG 52203, RMA 16102, ATCC BAA 1317

straininfo link

  • @ref: 72367
  • straininfo: 303344

literature

  • topic: Phylogeny
  • Pubmed-ID: 16825358
  • title: Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections.
  • authors: Warren YA, Tyrrell KL, Citron DM, Goldstein EJ
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.00116-06
  • year: 2006
  • mesh: Bacterial Proteins/analysis, Bacterial Typing Techniques, Clostridium/*classification/cytology/*isolation & purification/physiology, Clostridium Infections/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enzymes/analysis, Genes, rRNA, Humans, Indoles/metabolism, Microscopy, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7910Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19261)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19261
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
59463Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52203)https://www.ccug.se/strain?id=52203
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68367Automatically annotated from API 20A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72367Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID303344.1StrainInfo: A central database for resolving microbial strain identifiers