Strain identifier
BacDive ID: 2838
Type strain: 
Species: Clostridium alkalicellulosi
Strain Designation: Z-7026
Strain history: <- T. N. Zhilina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-7026 (Clostridium alkalicellum)
NCBI tax ID(s): 1002220 (strain), 320502 (species)
version 8.1 (current version)
General
@ref: 7000
BacDive-ID: 2838
DSM-Number: 17461
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Clostridium alkalicellulosi Z-7026 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from deposits of soda lake.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1002220 | strain |
| 320502 | species |
strain history
- @ref: 7000
- history: <- T. N. Zhilina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-7026 (Clostridium alkalicellum)
doi: 10.13145/bacdive2838.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium alkalicellulosi
- full scientific name: Clostridium alkalicellulosi corrig. Zhilina et al. 2006
synonyms
@ref synonym 20215 Clostridium alkalicellum 20215 Acetivibrio alkalicellulosi 20215 Hungateiclostridium alkalicellulosi
@ref: 7000
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio alkalicellulosi
full scientific name: Acetivibrio alkalicellulosi (Zhilina et al. 2006) Tindall 2019
strain designation: Z-7026
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.336 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 7000
- name: ACETIVIBRIO ALKALICELLULOSI MEDIUM (DSMZ Medium 1036)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1036.pdf
culture temp
- @ref: 7000
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 7000 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 91 |
| 69480 | yes | 100 |
compound production
- @ref: 7000
- compound: cellulase
Isolation, sampling and environmental information
isolation
- @ref: 7000
- sample type: deposits of soda lake
- geographic location: Buryatiya, Beloe soda lake
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Solid waste |
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_182264.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_196;96_2987;97_24426;98_118761;99_182264&stattab=map
- Last taxonomy: Acetivibrio alkalicellulosi subclade
- 16S sequence: AY959944
- Sequence Identity:
- Total samples: 92
- soil counts: 31
- aquatic counts: 34
- animal counts: 21
- plant counts: 6
Safety information
risk assessment
- @ref: 7000
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7000
- description: Clostridium alkalicellum 16S ribosomal RNA gene, partial sequence
- accession: AY959944
- length: 1489
- database: ena
- NCBI tax ID: 320502
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetivibrio alkalicellulosi DSM 17461 | GCA_008125075 | scaffold | ncbi | 320502 |
| 66792 | Hungateiclostridium alkalicellulosi strain DSM 17461 | 320502.3 | wgs | patric | 320502 |
| 66792 | Acetivibrio alkalicellulosi Z-7026, DSM 17461 | 2509887034 | draft | img | 320502 |
GC content
- @ref: 7000
- GC-content: 30
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 91 | no |
| motile | yes | 69.065 | no |
| flagellated | no | 66.863 | no |
| gram-positive | yes | 50.793 | no |
| anaerobic | yes | 99.01 | no |
| aerobic | no | 97.34 | yes |
| halophile | no | 94.019 | no |
| spore-forming | yes | 95.343 | no |
| thermophile | no | 88.483 | yes |
| glucose-util | yes | 87.416 | no |
| glucose-ferment | no | 52.637 | no |
External links
@ref: 7000
culture collection no.: DSM 17461, VKM B-2349
straininfo link
- @ref: 72362
- straininfo: 291125
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7000 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17461) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17461 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 72362 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291125.1 | StrainInfo: A central database for resolving microbial strain identifiers |