Strain identifier

BacDive ID: 2830

Type strain: Yes

Species: Intestinibacter bartlettii

Strain history: <- ATCC <- Y. L. Song et al.; WAL 16138

NCBI tax ID(s): 445973 (strain), 261299 (species)

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General

@ref: 6607

BacDive-ID: 2830

DSM-Number: 16795

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Intestinibacter bartlettii DSM 16795 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faecal material.

NCBI tax id

NCBI tax idMatching level
445973strain
261299species

strain history

  • @ref: 6607
  • history: <- ATCC <- Y. L. Song et al.; WAL 16138

doi: 10.13145/bacdive2830.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Intestinibacter
  • species: Intestinibacter bartlettii
  • full scientific name: Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Clostridium bartlettii

@ref: 6607

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Intestinibacter

species: Intestinibacter bartlettii

full scientific name: Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 99.999

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6607RCM MEDIUM (N2/CO2) (DSMZ Medium 634c)yeshttps://mediadive.dsmz.de/medium/634cName: RCM MEDIUM (N2/CO2) (DSMZ Medium 634c) Composition: dehydrated RCM medium 38.0 g/l Sodium carbonate 1.0 g/l Sodium resazurin 0.0005 g/l Distilled water
6607CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)yeshttps://mediadive.dsmz.de/medium/110aName: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

culture temp

  • @ref: 6607
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6607anaerobe
69480anaerobe99.566

Isolation, sampling and environmental information

isolation

  • @ref: 6607
  • sample type: human faecal material
  • geographic location: Chicago, Rush Childrens Hospital
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1804.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2;97_2;98_1426;99_1804&stattab=map
  • Last taxonomy: Intestinibacter bartlettii subclade
  • 16S sequence: AY438672
  • Sequence Identity:
  • Total samples: 70746
  • soil counts: 540
  • aquatic counts: 2367
  • animal counts: 67620
  • plant counts: 219

Safety information

risk assessment

  • @ref: 6607
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6607
  • description: Clostridium bartlettii strain WAL 16138 16S ribosomal RNA gene, partial sequence
  • accession: AY438672
  • length: 1429
  • database: ena
  • NCBI tax ID: 445973

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Intestinibacter bartlettii DSM 16795GCA_900167285scaffoldncbi445973
66792Intestinibacter bartlettii DSM 16795GCA_000154445scaffoldncbi445973
66792Intestinibacter bartlettii DSM 16795 strain DSM 16795445973.14wgspatric445973
66792Intestinibacter bartlettii DSM 167952585428074draftimg445973
66792Intestinibacter bartlettii DSM 16795641736113draftimg445973
66792Intestinibacter bartlettii DSM 16795GCA_025148965completencbi261299
66792Intestinibacter bartlettii strain DSM 16795261299.117completepatric261299

GC content

  • @ref: 6607
  • GC-content: 29.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes87no
motileno92.214no
flagellatedno96.007no
gram-positiveyes92.699no
anaerobicyes99.369yes
aerobicno98.359yes
halophileno67.813no
spore-formingyes57.517no
glucose-fermentyes61.219no
thermophileno96.353no
glucose-utilyes88.567no

External links

@ref: 6607

culture collection no.: DSM 16795, ATCC BAA 827, CCUG 48940, WAL 16138

straininfo link

  • @ref: 72354
  • straininfo: 134281

literature

  • topic: Phylogeny
  • Pubmed-ID: 16701516
  • title: Clostridium bartlettii sp. nov., isolated from human faeces.
  • authors: Song YL, Liu CX, McTeague M, Summanen P, Finegold SM
  • journal: Anaerobe
  • DOI: 10.1016/j.anaerobe.2004.04.004
  • year: 2004

Reference

@idauthorscataloguedoi/urltitle
6607Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16795)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16795
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
72354Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134281.1StrainInfo: A central database for resolving microbial strain identifiers