Strain identifier
BacDive ID: 283
Type strain:
Species: Aeromonas fluvialis
Strain Designation: 717
Strain history: CIP <- 2010, CECT <- M. J. Figueras, Rovira i Virgili Univ., Reus, Spain: strain 717
NCBI tax ID(s): 591962 (species)
General
@ref: 17182
BacDive-ID: 283
DSM-Number: 23621
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Aeromonas fluvialis 717 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from river water.
NCBI tax id
- NCBI tax id: 591962
- Matching level: species
strain history
@ref | history |
---|---|
17182 | <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain |
119412 | CIP <- 2010, CECT <- M. J. Figueras, Rovira i Virgili Univ., Reus, Spain: strain 717 |
doi: 10.13145/bacdive283.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas fluvialis
- full scientific name: Aeromonas fluvialis Alperi et al. 2010
@ref: 17182
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas fluvialis
full scientific name: Aeromonas fluvialis Alperi et al. 2010
strain designation: 717
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
23261 | negative | 3-3.5 µm | 0.6-0.7 µm | rod-shaped | yes | monotrichous, polar | |
69480 | yes | 98.634 | |||||
69480 | negative | 99.997 | |||||
119412 | negative | rod-shaped | yes |
colony morphology
- @ref: 23261
- type of hemolysis: gamma
- colony size: 4-5 mm
- colony color: beige, opaque
- incubation period: 2 days
- medium used: TSA
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
17182 | REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) | yes | https://mediadive.dsmz.de/medium/535b | Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water |
23261 | MacConkey agar | yes | ||
23261 | Trypticase Soy Agar (TSA) | yes | ||
23261 | TSB | yes | ||
41028 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119412 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17182 | positive | growth | 28 | mesophilic |
23261 | no | growth | 4 | psychrophilic |
23261 | positive | growth | 37 | mesophilic |
23261 | positive | optimum | 30 | mesophilic |
41028 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
23261 | positive | growth | 9 | alkaliphile |
23261 | no | growth | 4.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
23261 | facultative anaerobe |
119412 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
23261 | no | |
69481 | no | 100 |
69480 | no | 99.972 |
halophily
- @ref: 23261
- salt: NaCl
- growth: no
- tested relation: maximum
- concentration: 6 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23261 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
23261 | 17426 | 5-dehydro-D-gluconate | - | builds acid from |
23261 | 27613 | amygdalin | - | builds acid from |
23261 | 18305 | arbutin | - | builds acid from |
23261 | 15963 | ribitol | - | builds acid from |
23261 | 17108 | D-arabinose | - | builds acid from |
23261 | 18333 | D-arabitol | - | builds acid from |
23261 | 28847 | D-fucose | - | builds acid from |
23261 | 62318 | D-lyxose | - | builds acid from |
23261 | 16899 | D-mannitol | - | builds acid from |
23261 | 17924 | D-sorbitol | - | builds acid from |
23261 | 16443 | D-tagatose | - | builds acid from |
23261 | 65327 | D-xylose | - | builds acid from |
23261 | 16813 | galactitol | - | builds acid from |
23261 | 17113 | erythritol | - | builds acid from |
23261 | 4853 | esculin | - | builds acid from |
23261 | 17268 | myo-inositol | - | builds acid from |
23261 | 15443 | inulin | - | builds acid from |
23261 | 30849 | L-arabinose | - | builds acid from |
23261 | 18403 | L-arabitol | - | builds acid from |
23261 | 18287 | L-fucose | - | builds acid from |
23261 | 62345 | L-rhamnose | - | builds acid from |
23261 | 17266 | L-sorbose | - | builds acid from |
23261 | 65328 | L-xylose | - | builds acid from |
23261 | 6731 | melezitose | - | builds acid from |
23261 | 28053 | melibiose | - | builds acid from |
23261 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
23261 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
23261 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
23261 | 16634 | raffinose | - | builds acid from |
23261 | 32528 | turanose | - | builds acid from |
23261 | 17151 | xylitol | - | builds acid from |
23261 | 17128 | adipate | - | carbon source |
23261 | 27689 | decanoate | - | carbon source |
23261 | 16947 | citrate | - | carbon source |
23261 | 16899 | D-mannitol | - | carbon source |
23261 | 30849 | L-arabinose | - | carbon source |
23261 | 18401 | phenylacetate | - | carbon source |
23261 | 4767 | elastin | - | hydrolysis |
23261 | 4853 | esculin | - | hydrolysis |
23261 | 5291 | gelatin | - | hydrolysis |
23261 | 17057 | cellobiose | + | builds acid from |
23261 | 15824 | D-fructose | + | builds acid from |
23261 | 12936 | D-galactose | + | builds acid from |
23261 | 17634 | D-glucose | + | builds acid from |
23261 | 16024 | D-mannose | + | builds acid from |
23261 | 16988 | D-ribose | + | builds acid from |
23261 | 28066 | gentiobiose | + | builds acid from |
23261 | 24265 | gluconate | + | builds acid from |
23261 | 17754 | glycerol | + | builds acid from |
23261 | 28087 | glycogen | + | builds acid from |
23261 | 17716 | lactose | + | builds acid from |
23261 | 17306 | maltose | + | builds acid from |
23261 | 506227 | N-acetylglucosamine | + | builds acid from |
23261 | 17814 | salicin | + | builds acid from |
23261 | 28017 | starch | + | builds acid from |
23261 | 17992 | sucrose | + | builds acid from |
23261 | 27082 | trehalose | + | builds acid from |
23261 | 17234 | glucose | + | builds gas from |
23261 | 16947 | citrate | + | carbon source |
23261 | 17634 | D-glucose | + | carbon source |
23261 | 16024 | D-mannose | + | carbon source |
23261 | 24265 | gluconate | + | carbon source |
23261 | 25115 | malate | + | carbon source |
23261 | 17306 | maltose | + | carbon source |
23261 | 506227 | N-acetylglucosamine | + | carbon source |
23261 | 27897 | tryptophan | + | energy source |
23261 | 17632 | nitrate | + | reduction |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | + | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | + | builds acid from |
68371 | 28017 | starch | + | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
119412 | 17632 | nitrate | + | reduction |
119412 | 16301 | nitrite | - | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is resistant | group ID | is sensitive |
---|---|---|---|---|---|---|
23261 | 2676 | amoxicillin | yes | yes | ||
23261 | 2676 | amoxicillin | yes | yes | 10 | |
23261 | 9587 | ticarcillin | yes | yes | ||
23261 | 73908 | vibriostat | yes | yes | ||
23261 | 2637 | amikacin | yes | yes | ||
23261 | 161680 | aztreonam | yes | yes | ||
23261 | 478164 | cefepime | yes | yes | ||
23261 | 3493 | cefoperazone | yes | yes | ||
23261 | 209807 | cefoxitin | yes | yes | ||
23261 | 3508 | ceftazidime | yes | yes | ||
23261 | 29007 | ceftriaxone | yes | yes | ||
23261 | 3542 | cephalothin | yes | yes | ||
23261 | 204928 | cefotaxime | yes | yes | ||
23261 | 17698 | chloramphenicol | yes | yes | ||
23261 | 100241 | ciprofloxacin | yes | yes | ||
23261 | 48923 | erythromycin | yes | yes | ||
23261 | 28915 | fosfomycin | yes | yes | ||
23261 | 17833 | gentamicin | yes | yes | ||
23261 | 471744 | imipenem | yes | yes | ||
23261 | 6104 | kanamycin | yes | yes | ||
23261 | 100147 | nalidixic acid | yes | yes | ||
23261 | 17076 | streptomycin | yes | yes | ||
23261 | 27902 | tetracycline | yes | yes | ||
23261 | 28864 | tobramycin | yes | yes | ||
23261 | 45924 | trimethoprim | yes | yes | ||
23261 | 48947 | clavulanic acid | yes | yes | 10 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23261 | 16136 | hydrogen sulfide | no |
23261 | 15688 | acetoin | no |
23261 | 35581 | indole | yes |
119412 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
23261 | 15688 | acetoin | - | |
23261 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23261 | arginine dihydrolase | - | 3.5.3.6 |
23261 | beta-galactosidase | + | 3.2.1.23 |
23261 | catalase | + | 1.11.1.6 |
23261 | cytochrome oxidase | + | 1.9.3.1 |
23261 | DNase | - | |
23261 | lysine decarboxylase | - | 4.1.1.18 |
23261 | ornithine decarboxylase | - | 4.1.1.17 |
23261 | tryptophan deaminase | + | 4.1.99.1 |
23261 | tryptophan deaminase | - | 4.1.99.1 |
23261 | urease | - | 3.5.1.5 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
119412 | oxidase | + | |
119412 | catalase | + | 1.11.1.6 |
119412 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119412 | - | + | + | + | + | + | + | + | + | - | + | + | - | + | - | + | - | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119412 | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | +/- | - | +/- | - | + | + | - | - | + | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
17182 | river water | Girona, Muga river | Spain | ESP | Europe |
119412 | Environment, Water, Muga river | Girona | Spain | ESP | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
taxonmaps
- @ref: 69479
- File name: preview.99_537.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: FJ230078
- Sequence Identity:
- Total samples: 1750
- soil counts: 68
- aquatic counts: 1144
- animal counts: 488
- plant counts: 50
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
17182 | 1 | Risk group (German classification) |
119412 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas fluvialis strain LMG24681 isolate TTGE gel band 14 16S ribosomal RNA gene, partial sequence | JX453438 | 151 | ena | 591962 |
17182 | Aeromonas fluvialis strain 717 16S ribosomal RNA gene, partial sequence | FJ230078 | 1503 | ena | 591962 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas fluvialis LMG 24681 | GCA_000819885 | scaffold | ncbi | 591962 |
66792 | Aeromonas fluvialis LMG 24681 | 591962.3 | wgs | patric | 591962 |
66792 | Aeromonas fluvialis LMG 24681 | 2639762841 | draft | img | 591962 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.89 | no |
flagellated | yes | 91.087 | yes |
gram-positive | no | 98.63 | no |
anaerobic | no | 96.355 | yes |
aerobic | yes | 80.536 | no |
halophile | no | 79.316 | no |
spore-forming | no | 95.811 | yes |
thermophile | no | 98.186 | yes |
glucose-util | yes | 90.963 | no |
glucose-ferment | yes | 86.843 | no |
External links
@ref: 17182
culture collection no.: DSM 23621, CECT 7401, LMG 24681, CIP 110205
straininfo link
- @ref: 69965
- straininfo: 356286
literature
- topic: Phylogeny
- Pubmed-ID: 19648345
- title: Aeromonas fluvialis sp. nov., isolated from a Spanish river.
- authors: Alperi A, Martinez-Murcia AJ, Monera A, Saavedra MJ, Figueras MJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.011643-0
- year: 2009
- mesh: Aeromonas/*classification/genetics/*isolation & purification/metabolism, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Spain
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17182 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23621) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23621 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23261 | Anabel Alperi, Antonio J. Martínez-Murcia, Arturo Monera, Maria J. Saavedra, Maria J. Figueras | 10.1099/ijs.0.011643-0 | Aeromonas fluvialis sp. nov., isolated from a Spanish river | IJSEM 60: 72-77 2010 | 19648345 | |
41028 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8039 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69965 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID356286.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119412 | Curators of the CIP | Collection of Institut Pasteur (CIP 110205) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110205 |