Strain identifier

BacDive ID: 283

Type strain: Yes

Species: Aeromonas fluvialis

Strain Designation: 717

Strain history: CIP <- 2010, CECT <- M. J. Figueras, Rovira i Virgili Univ., Reus, Spain: strain 717

NCBI tax ID(s): 591962 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17182

BacDive-ID: 283

DSM-Number: 23621

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Aeromonas fluvialis 717 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from river water.

NCBI tax id

  • NCBI tax id: 591962
  • Matching level: species

strain history

@refhistory
17182<- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain
119412CIP <- 2010, CECT <- M. J. Figueras, Rovira i Virgili Univ., Reus, Spain: strain 717

doi: 10.13145/bacdive283.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas fluvialis
  • full scientific name: Aeromonas fluvialis Alperi et al. 2010

@ref: 17182

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas fluvialis

full scientific name: Aeromonas fluvialis Alperi et al. 2010

strain designation: 717

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
23261negative3-3.5 µm0.6-0.7 µmrod-shapedyesmonotrichous, polar
69480yes98.634
69480negative99.997
119412negativerod-shapedyes

colony morphology

  • @ref: 23261
  • type of hemolysis: gamma
  • colony size: 4-5 mm
  • colony color: beige, opaque
  • incubation period: 2 days
  • medium used: TSA

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17182REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
23261MacConkey agaryes
23261Trypticase Soy Agar (TSA)yes
23261TSByes
41028MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119412CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
17182positivegrowth28mesophilic
23261nogrowth4psychrophilic
23261positivegrowth37mesophilic
23261positiveoptimum30mesophilic
41028positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23261positivegrowth9alkaliphile
23261nogrowth4.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23261facultative anaerobe
119412facultative anaerobe

spore formation

@refspore formationconfidence
23261no
69481no100
69480no99.972

halophily

  • @ref: 23261
  • salt: NaCl
  • growth: no
  • tested relation: maximum
  • concentration: 6 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23261168082-dehydro-D-gluconate-builds acid from
23261174265-dehydro-D-gluconate-builds acid from
2326127613amygdalin-builds acid from
2326118305arbutin-builds acid from
2326115963ribitol-builds acid from
2326117108D-arabinose-builds acid from
2326118333D-arabitol-builds acid from
2326128847D-fucose-builds acid from
2326162318D-lyxose-builds acid from
2326116899D-mannitol-builds acid from
2326117924D-sorbitol-builds acid from
2326116443D-tagatose-builds acid from
2326165327D-xylose-builds acid from
2326116813galactitol-builds acid from
2326117113erythritol-builds acid from
232614853esculin-builds acid from
2326117268myo-inositol-builds acid from
2326115443inulin-builds acid from
2326130849L-arabinose-builds acid from
2326118403L-arabitol-builds acid from
2326118287L-fucose-builds acid from
2326162345L-rhamnose-builds acid from
2326117266L-sorbose-builds acid from
2326165328L-xylose-builds acid from
232616731melezitose-builds acid from
2326128053melibiose-builds acid from
23261320061methyl alpha-D-glucopyranoside-builds acid from
2326143943methyl alpha-D-mannoside-builds acid from
2326174863methyl beta-D-xylopyranoside-builds acid from
2326116634raffinose-builds acid from
2326132528turanose-builds acid from
2326117151xylitol-builds acid from
2326117128adipate-carbon source
2326127689decanoate-carbon source
2326116947citrate-carbon source
2326116899D-mannitol-carbon source
2326130849L-arabinose-carbon source
2326118401phenylacetate-carbon source
232614767elastin-hydrolysis
232614853esculin-hydrolysis
232615291gelatin-hydrolysis
2326117057cellobiose+builds acid from
2326115824D-fructose+builds acid from
2326112936D-galactose+builds acid from
2326117634D-glucose+builds acid from
2326116024D-mannose+builds acid from
2326116988D-ribose+builds acid from
2326128066gentiobiose+builds acid from
2326124265gluconate+builds acid from
2326117754glycerol+builds acid from
2326128087glycogen+builds acid from
2326117716lactose+builds acid from
2326117306maltose+builds acid from
23261506227N-acetylglucosamine+builds acid from
2326117814salicin+builds acid from
2326128017starch+builds acid from
2326117992sucrose+builds acid from
2326127082trehalose+builds acid from
2326117234glucose+builds gas from
2326116947citrate+carbon source
2326117634D-glucose+carbon source
2326116024D-mannose+carbon source
2326124265gluconate+carbon source
2326125115malate+carbon source
2326117306maltose+carbon source
23261506227N-acetylglucosamine+carbon source
2326127897tryptophan+energy source
2326117632nitrate+reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
11941217632nitrate+reduction
11941216301nitrite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantgroup IDis sensitive
232612676amoxicillinyesyes
232612676amoxicillinyesyes10
232619587ticarcillinyesyes
2326173908vibriostatyesyes
232612637amikacinyesyes
23261161680aztreonamyesyes
23261478164cefepimeyesyes
232613493cefoperazoneyesyes
23261209807cefoxitinyesyes
232613508ceftazidimeyesyes
2326129007ceftriaxoneyesyes
232613542cephalothinyesyes
23261204928cefotaximeyesyes
2326117698chloramphenicolyesyes
23261100241ciprofloxacinyesyes
2326148923erythromycinyesyes
2326128915fosfomycinyesyes
2326117833gentamicinyesyes
23261471744imipenemyesyes
232616104kanamycinyesyes
23261100147nalidixic acidyesyes
2326117076streptomycinyesyes
2326127902tetracyclineyesyes
2326128864tobramycinyesyes
2326145924trimethoprimyesyes
2326148947clavulanic acidyesyes10

metabolite production

@refChebi-IDmetaboliteproduction
2326116136hydrogen sulfideno
2326115688acetoinno
2326135581indoleyes
11941235581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2326115688acetoin-
2326135581indole+

enzymes

@refvalueactivityec
23261arginine dihydrolase-3.5.3.6
23261beta-galactosidase+3.2.1.23
23261catalase+1.11.1.6
23261cytochrome oxidase+1.9.3.1
23261DNase-
23261lysine decarboxylase-4.1.1.18
23261ornithine decarboxylase-4.1.1.17
23261tryptophan deaminase+4.1.99.1
23261tryptophan deaminase-4.1.99.1
23261urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119412oxidase+
119412catalase+1.11.1.6
119412urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119412-++++++++-++-+-+-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119412+---+----++++--------++/--+/--++--++---++-+-------+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17182river waterGirona, Muga riverSpainESPEurope
119412Environment, Water, Muga riverGironaSpainESPEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_537.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: FJ230078
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 68
  • aquatic counts: 1144
  • animal counts: 488
  • plant counts: 50

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
171821Risk group (German classification)
1194121Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas fluvialis strain LMG24681 isolate TTGE gel band 14 16S ribosomal RNA gene, partial sequenceJX453438151ena591962
17182Aeromonas fluvialis strain 717 16S ribosomal RNA gene, partial sequenceFJ2300781503ena591962

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas fluvialis LMG 24681GCA_000819885scaffoldncbi591962
66792Aeromonas fluvialis LMG 24681591962.3wgspatric591962
66792Aeromonas fluvialis LMG 246812639762841draftimg591962

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.89no
flagellatedyes91.087yes
gram-positiveno98.63no
anaerobicno96.355yes
aerobicyes80.536no
halophileno79.316no
spore-formingno95.811yes
thermophileno98.186yes
glucose-utilyes90.963no
glucose-fermentyes86.843no

External links

@ref: 17182

culture collection no.: DSM 23621, CECT 7401, LMG 24681, CIP 110205

straininfo link

  • @ref: 69965
  • straininfo: 356286

literature

  • topic: Phylogeny
  • Pubmed-ID: 19648345
  • title: Aeromonas fluvialis sp. nov., isolated from a Spanish river.
  • authors: Alperi A, Martinez-Murcia AJ, Monera A, Saavedra MJ, Figueras MJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.011643-0
  • year: 2009
  • mesh: Aeromonas/*classification/genetics/*isolation & purification/metabolism, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Spain
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17182Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23621)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23621
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23261Anabel Alperi, Antonio J. Martínez-Murcia, Arturo Monera, Maria J. Saavedra, Maria J. Figueras10.1099/ijs.0.011643-0Aeromonas fluvialis sp. nov., isolated from a Spanish riverIJSEM 60: 72-77 201019648345
41028Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8039
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID356286.1StrainInfo: A central database for resolving microbial strain identifiers
119412Curators of the CIPCollection of Institut Pasteur (CIP 110205)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110205