Strain identifier

BacDive ID: 2824

Type strain: Yes

Species: Clostridium bowmanii

Strain Designation: A-1/C-an/C1, H11

Strain history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/C1 <- H. Hippe {1999}

NCBI tax ID(s): 132925 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5249

BacDive-ID: 2824

DSM-Number: 14206

keywords: 16S sequence, genome sequence, Bacteria, anaerobe, psychrophilic

description: Clostridium bowmanii A-1/C-an/C1 is an anaerobe, psychrophilic bacterium that was isolated from microbial mat sample.

NCBI tax id

  • NCBI tax id: 132925
  • Matching level: species

strain history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/C1 <- H. Hippe {1999}

doi: 10.13145/bacdive2824.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium bowmanii
  • full scientific name: Clostridium bowmanii Spring et al. 2003

@ref: 5249

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium bowmanii

full scientific name: Clostridium bowmanii Spring et al. 2003

strain designation: A-1/C-an/C1, H11

type strain: yes

Morphology

colony morphology

  • @ref: 5249
  • incubation period: >14 days

Culture and growth conditions

culture medium

  • @ref: 5249
  • name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/339a
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 5249
  • growth: positive
  • type: growth
  • temperature: 15
  • range: psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5249
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5249
  • sample type: microbial mat sample
  • geographic location: McMurdo Dry Valley Region, Lake Fryxell
  • country: Antarctica
  • origin.country: ATA
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Microbial community
  • Cat3: #Microbial mat

Safety information

risk assessment

  • @ref: 5249
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium aff. estertheticum A-1/C-an/C1 partial 16S rRNA geneAJ2974421402ena132925
5249Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 11AJ5061191477ena132925
5249Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 16AJ5061201474ena132925

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium bowmanii DSM 14206GCA_018861315contigncbi132925
66792Clostridium bowmanii DSM 14206GCA_020176155contigncbi132925
66792Clostridium bowmanii strain DSM 14206132925.3wgspatric132925

GC content

  • @ref: 5249
  • GC-content: 32
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5249

culture collection no.: DSM 14206, ATCC BAA 581

straininfo link

@refpassport
20218http://www.straininfo.net/strains/278374
20218http://www.straininfo.net/strains/340467

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12892121Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.02554-02003Antarctic Regions, Clostridium/*classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/microbiology, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as TopicGenetics
Phylogeny19502327Clostridium tagluense sp. nov., a psychrotolerant, anaerobic, spore-forming bacterium from permafrost.Suetin SV, Shcherbakova VA, Chuvilskaya NA, Rivkina EM, Suzina NE, Lysenko AM, Gilichinsky DAInt J Syst Evol Microbiol10.1099/ijs.0.002295-02009Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Canada, Clostridium/*classification/genetics/isolation & purification/*physiology, Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genotype, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Spores, Bacterial/physiologyGenetics
Genetics34989621Draft Genome Sequence of Clostridium bowmanii DSM 14206(T), Isolated from an Antarctic Microbial Mat.Palevich FP, Palevich N, Maclean PH, Altermann E, Mills J, Brightwell GMicrobiol Resour Announc10.1128/MRA.01035-212022Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14206)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14206
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)