Strain identifier
BacDive ID: 2824
Type strain: 
Species: Clostridium bowmanii
Strain Designation: A-1/C-an/C1, H11
Strain history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/C1 <- H. Hippe {1999}
NCBI tax ID(s): 132925 (species)
version 8.1 (current version)
General
@ref: 5249
BacDive-ID: 2824
DSM-Number: 14206
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, psychrophilic, motile
description: Clostridium bowmanii A-1/C-an/C1 is an anaerobe, spore-forming, psychrophilic bacterium that was isolated from microbial mat sample.
NCBI tax id
- NCBI tax id: 132925
- Matching level: species
strain history
- @ref: 5249
- history: <- H. Hippe, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; A-1/C-an/C1 <- H. Hippe {1999}
doi: 10.13145/bacdive2824.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium bowmanii
- full scientific name: Clostridium bowmanii Spring et al. 2003
@ref: 5249
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium bowmanii
full scientific name: Clostridium bowmanii Spring et al. 2003
strain designation: A-1/C-an/C1, H11
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.443 | |
| 69480 | 100 | positive |
colony morphology
- @ref: 5249
- incubation period: >14 days
Culture and growth conditions
culture medium
- @ref: 5249
- name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339a
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 5249
- growth: positive
- type: growth
- temperature: 15
- range: psychrophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 5249 | anaerobe | |
| 69480 | anaerobe | 98.808 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 5249
- sample type: microbial mat sample
- geographic location: McMurdo Dry Valley Region, Lake Fryxell
- country: Antarctica
- origin.country: ATA
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Microbial community
- Cat3: #Microbial mat
Safety information
risk assessment
- @ref: 5249
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium aff. estertheticum A-1/C-an/C1 partial 16S rRNA gene | AJ297442 | 1402 | ena | 132925 |
| 5249 | Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 11 | AJ506119 | 1477 | ena | 132925 |
| 5249 | Clostridium bowmanii 16S rRNA gene, type strain DSM 14206, clone 16 | AJ506120 | 1474 | ena | 132925 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium bowmanii DSM 14206 | GCA_018861315 | contig | ncbi | 132925 |
| 66792 | Clostridium bowmanii DSM 14206 | GCA_020176155 | contig | ncbi | 132925 |
| 66792 | Clostridium bowmanii strain DSM 14206 | 132925.3 | wgs | patric | 132925 |
GC content
- @ref: 5249
- GC-content: 32
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 83.966 | no |
| gram-positive | yes | 67.566 | no |
| anaerobic | yes | 98.104 | yes |
| halophile | no | 91.113 | no |
| spore-forming | yes | 95.824 | no |
| glucose-util | yes | 91.625 | no |
| aerobic | no | 96.93 | no |
| flagellated | yes | 65.81 | no |
| thermophile | no | 97.973 | yes |
| glucose-ferment | yes | 62.212 | no |
External links
@ref: 5249
culture collection no.: DSM 14206, ATCC BAA 581
straininfo link
- @ref: 72348
- straininfo: 87994
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12892121 | Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov. | Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.02554-0 | 2003 | Antarctic Regions, Clostridium/*classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/microbiology, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic | Genetics |
| Phylogeny | 19502327 | Clostridium tagluense sp. nov., a psychrotolerant, anaerobic, spore-forming bacterium from permafrost. | Suetin SV, Shcherbakova VA, Chuvilskaya NA, Rivkina EM, Suzina NE, Lysenko AM, Gilichinsky DA | Int J Syst Evol Microbiol | 10.1099/ijs.0.002295-0 | 2009 | Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Canada, Clostridium/*classification/genetics/isolation & purification/*physiology, Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genotype, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Spores, Bacterial/physiology | Genetics |
| Genetics | 34989621 | Draft Genome Sequence of Clostridium bowmanii DSM 14206(T), Isolated from an Antarctic Microbial Mat. | Palevich FP, Palevich N, Maclean PH, Altermann E, Mills J, Brightwell G | Microbiol Resour Announc | 10.1128/MRA.01035-21 | 2022 | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5249 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14206) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14206 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 72348 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87994.1 | StrainInfo: A central database for resolving microbial strain identifiers |