Strain identifier
BacDive ID: 2821
Type strain:
Species: Enterocloster bolteae
Strain history: CIP <- 2007, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10225 <- DSMZ <- ATCC <- S.M. Finegold: strain WAL 16351
NCBI tax ID(s): 208479 (species)
General
@ref: 6024
BacDive-ID: 2821
DSM-Number: 15670
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped, human pathogen
description: Enterocloster bolteae JCM 12243 is an anaerobe, mesophilic, Gram-positive human pathogen that was isolated from stool specimens of children.
NCBI tax id
- NCBI tax id: 208479
- Matching level: species
strain history
@ref | history |
---|---|
6024 | <- ATCC; ATCC BAA-613 <- S. M. Finegold; WAL 16351 |
67770 | CCUG 46953 <-- Y. Song WAL 16351. |
116836 | CIP <- 2007, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10225 <- DSMZ <- ATCC <- S.M. Finegold: strain WAL 16351 |
doi: 10.13145/bacdive2821.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Enterocloster
- species: Enterocloster bolteae
- full scientific name: Enterocloster bolteae (Song et al. 2003) Haas and Blanchard 2020
synonyms
@ref synonym 20215 Lachnoclostridium bolteae 20215 Clostridium bolteae
@ref: 6024
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Enterocloster
species: Enterocloster bolteae
full scientific name: Enterocloster bolteae (Song et al. 2003) Haas and Blanchard 2020
type strain: yes
Morphology
cell morphology
- @ref: 116836
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 57419
- incubation period: 1 day
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6024 | PY + X MEDIUM (DSMZ Medium 104b) | yes | https://mediadive.dsmz.de/medium/104b | Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
39709 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
116836 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6024 | positive | growth | 37 | mesophilic |
39709 | positive | growth | 37 | mesophilic |
57419 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6024 | anaerobe |
57419 | anaerobe |
116836 | anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116836 | 17632 | nitrate | + | reduction |
116836 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 116836
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
116836 | oxidase | - | |
116836 | catalase | - | 1.11.1.6 |
116836 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116836 | - | + | - | - | - | - | - | - | - | - | + | - | + | + | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6024 | stool specimens of children | ||||
57419 | Human feces,child with late-onset autism | Los Angeles | USA | USA | North America |
67770 | Stool specimens of children with late-onset autism | ||||
116836 | Human, Feces |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Infection | #Patient | #Specimen |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human | #Child |
taxonmaps
- @ref: 69479
- File name: preview.99_285.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_176;97_190;98_241;99_285&stattab=map
- Last taxonomy: Enterocloster bolteae
- 16S sequence: AJ508452
- Sequence Identity:
- Total samples: 91567
- soil counts: 424
- aquatic counts: 1298
- animal counts: 89539
- plant counts: 306
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
6024 | yes, in single cases | 1 | Risk group (German classification) |
116836 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Clostridium bolteae strain DSM 15670 16S ribosomal RNA gene, partial sequence | HM245933 | 846 | ena | 208479 |
6024 | Clostridium boltei partial 16S rRNA gene, strain 16351 | AJ508452 | 1498 | ena | 208479 |
67770 | Clostridium bolteae gene for 16S ribosomal RNA, partial sequence, strain: JCM 12243 | AB649278 | 1390 | ena | 208479 |
Genome sequences
- @ref: 67770
- description: Enterocloster bolteae ATCC BAA-613
- accession: GCA_000154365
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 411902
GC content
@ref | GC-content | method |
---|---|---|
6024 | 49.0 | sequence analysis |
67770 | 50.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 76.782 | no |
flagellated | no | 64.312 | no |
gram-positive | yes | 77.863 | no |
anaerobic | yes | 98.871 | yes |
aerobic | no | 97.594 | yes |
halophile | no | 89.55 | no |
spore-forming | yes | 72.774 | no |
thermophile | no | 97.812 | yes |
glucose-util | yes | 92.422 | no |
glucose-ferment | yes | 74.363 | no |
External links
@ref: 6024
culture collection no.: JCM 12243, DSM 15670, ATCC BAA 613, CCUG 46953, WAL 16351, CIP 109439, VTT E-052776, AIP 10225
straininfo link
- @ref: 72345
- straininfo: 110852
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12747414 | Clostridium bolteae sp. nov., isolated from human sources. | Song Y, Liu C, Molitoris DR, Tomzynski TJ, Lawson PA, Collins MD, Finegold SM | Syst Appl Microbiol | 10.1078/072320203322337353 | 2003 | Clostridium/*classification/enzymology/genetics/isolation & purification, Culture Media, Esculin/metabolism, Feces/microbiology, Glucuronidase/biosynthesis, Humans, Microbial Sensitivity Tests, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis | Enzymology |
Phylogeny | 23625266 | Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces. | Takada T, Kurakawa T, Tsuji H, Nomoto K | Int J Syst Evol Microbiol | 10.1099/ijs.0.045823-0 | 2013 | Adult, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Gram-Positive Asporogenous Rods/*classification/genetics/isolation & purification, Humans, Lysine/analysis, Middle Aged, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
Pathogenicity | 35333269 | ROESY and (13)C NMR to distinguish between D- and L-rhamnose in the alpha-D-Manp-(1 --> 4)-beta-Rhap-(1 --> 3) repeating motif. | Davidson J, Gauthier-Signore C, Bishop KP, Wicks C, Monteiro MA, Roy PN, Auzanneau FI | Org Biomol Chem | 10.1039/d2ob00131d | 2022 | *Autism Spectrum Disorder, Child, Disaccharides, Humans, Magnetic Resonance Spectroscopy, Mannose/chemistry, *Rhamnose/chemistry |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6024 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15670) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15670 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39709 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7183 | ||||
57419 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 46953) | https://www.ccug.se/strain?id=46953 | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72345 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID110852.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116836 | Curators of the CIP | Collection of Institut Pasteur (CIP 109439) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109439 |