Strain identifier
BacDive ID: 282
Type strain: 
Species: Aeromonas piscicola
Strain Designation: S1.2
Strain history: <- LMG <- J. L. Romalde, University of Santiago de Compostela, Spain; S1.2 <- S. Nunez
NCBI tax ID(s): 600645 (species)
version 8.1 (current version)
General
@ref: 17216
BacDive-ID: 282
DSM-Number: 23451
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen
description: Aeromonas piscicola S1.2 is a mesophilic, motile animal pathogen that was isolated from diseased wild salmon .
NCBI tax id
- NCBI tax id: 600645
- Matching level: species
strain history
- @ref: 17216
- history: <- LMG <- J. L. Romalde, University of Santiago de Compostela, Spain; S1.2 <- S. Nunez
doi: 10.13145/bacdive282.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas piscicola
- full scientific name: Aeromonas piscicola Beaz-Hidalgo et al. 2010
@ref: 17216
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas piscicola
full scientific name: Aeromonas piscicola Beaz-Hidalgo et al. 2010
strain designation: S1.2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.161 | |
| 69480 | 99.992 | negative |
Culture and growth conditions
culture medium
- @ref: 17216
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 17216
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.973 |
Isolation, sampling and environmental information
isolation
- @ref: 17216
- sample type: diseased wild salmon (Salmo salar)
- host species: Salmo salar
- geographic location: Carballedo, Galicia
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
- Cat3: #Salmonidae
taxonmaps
- @ref: 69479
- File name: preview.99_485.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_485&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: HQ832417
- Sequence Identity:
- Total samples: 313
- soil counts: 16
- aquatic counts: 156
- animal counts: 131
- plant counts: 10
Safety information
risk assessment
- @ref: 17216
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Aeromonas piscicola strain CECT7443 16S ribosomal RNA gene, partial sequence | HQ832417 | 1503 | ena | 600645 |
| 17216 | Aeromonas piscicola partial 16S rRNA gene, type strain S1.2T | FM999971 | 1338 | ena | 600645 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aeromonas piscicola LMG 24783 | GCA_000820005 | scaffold | ncbi | 600645 |
| 66792 | Aeromonas piscicola LMG 24783 | 600645.3 | wgs | patric | 600645 |
| 66792 | Aeromonas piscicola LMG 24783 | 2648501384 | draft | img | 600645 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.198 | no |
| flagellated | yes | 91.641 | no |
| gram-positive | no | 98.762 | no |
| anaerobic | no | 96.013 | no |
| aerobic | yes | 85.945 | no |
| halophile | no | 88.607 | no |
| spore-forming | no | 95.661 | no |
| glucose-util | yes | 90.264 | no |
| thermophile | no | 99.62 | yes |
| glucose-ferment | yes | 87.865 | no |
External links
@ref: 17216
culture collection no.: DSM 23451, CECT 7443, LMG 24783
straininfo link
- @ref: 69964
- straininfo: 359331
literature
- topic: Phylogeny
- Pubmed-ID: 19570633
- title: Aeromonas piscicola sp. nov., isolated from diseased fish.
- authors: Beaz-Hidalgo R, Alperi A, Figueras MJ, Romalde JL
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2009.06.004
- year: 2009
- mesh: Aeromonas/*classification/genetics/*isolation & purification/ultrastructure, Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fish Diseases/*microbiology, Fishes, Gram-Negative Bacterial Infections/microbiology/*veterinary, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17216 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23451) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23451 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 69964 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID359331.1 | StrainInfo: A central database for resolving microbial strain identifiers |