Strain identifier
BacDive ID: 2801
Type strain: 
Species: Clostridium peptidivorans
Strain history: <- J. L. Garcia, Universités de Provence et de la Méditerranée, ESIL, Marseille, France; TMC4 <- T. Mechichi {1998}
NCBI tax ID(s): 100174 (species)
version 8.1 (current version)
General
@ref: 4751
BacDive-ID: 2801
DSM-Number: 12505
keywords: 16S sequence, Bacteria, anaerobe
description: Clostridium peptidivorans DSM 12505 is an anaerobe bacterium that was isolated from anaerobic digester fed with olive mill wastewater.
NCBI tax id
- NCBI tax id: 100174
- Matching level: species
strain history
- @ref: 4751
- history: <- J. L. Garcia, Universités de Provence et de la Méditerranée, ESIL, Marseille, France; TMC4 <- T. Mechichi {1998}
doi: 10.13145/bacdive2801.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium peptidivorans
- full scientific name: Clostridium peptidivorans Mechichi et al. 2000
@ref: 4751
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium peptidivorans
full scientific name: Clostridium peptidivorans Mechichi et al. 2000
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 4751
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4751
- sample type: anaerobic digester fed with olive mill wastewater
- geographic location: Sfax
- country: Tunisia
- origin.country: TUN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Industrial | |
| #Engineered | #Waste | #Industrial wastewater |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_175350.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_2632;97_3224;98_4051;99_175350&stattab=map
- Last taxonomy: Clostridium peptidivorans
- 16S sequence: AF156796
- Sequence Identity:
- Total samples: 52
- soil counts: 13
- aquatic counts: 8
- animal counts: 29
- plant counts: 2
Safety information
risk assessment
- @ref: 4751
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4751
- description: Clostridium peptidovorans 16S ribosomal RNA gene, partial sequence
- accession: AF156796
- length: 1481
- database: ena
- NCBI tax ID: 100174
GC content
- @ref: 4751
- GC-content: 31
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4751
culture collection no.: DSM 12505, TMC 4
straininfo link
- @ref: 72327
- straininfo: 49308
literature
- topic: Phylogeny
- Pubmed-ID: 10843071
- title: Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester.
- authors: Mechichi T, Fardeau ML, Labat M, Garcia JL, Verhe F, Patel BK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-50-3-1259
- year: 2000
- mesh: Amino Acids/metabolism, Base Composition, Clostridium/*classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fermentation, *Industrial Waste, Molecular Sequence Data, Olive Oil, Peptides/*metabolism, Phenotype, Phylogeny, *Plant Oils, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Waste Disposal, Fluid
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4751 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12505) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12505 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72327 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49308.1 | StrainInfo: A central database for resolving microbial strain identifiers |