Strain identifier
BacDive ID: 2794
Type strain: 
Species: Lacrimispora algidixylanolytica
Strain history: <- D. M. Broda, University of Waikato, Hamilton, New Zealand; SPL73 <- D. M. Broda {1995}
NCBI tax ID(s): 94868 (species)
version 8.1 (current version)
General
@ref: 4667
BacDive-ID: 2794
DSM-Number: 12273
keywords: 16S sequence, Bacteria, anaerobe, psychrophilic
description: Lacrimispora algidixylanolytica DSM 12273 is an anaerobe, psychrophilic bacterium that was isolated from vakuum-packed lamb.
NCBI tax id
- NCBI tax id: 94868
- Matching level: species
strain history
- @ref: 4667
- history: <- D. M. Broda, University of Waikato, Hamilton, New Zealand; SPL73 <- D. M. Broda {1995}
doi: 10.13145/bacdive2794.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Lacrimispora
- species: Lacrimispora algidixylanolytica
- full scientific name: Lacrimispora algidixylanolytica (Broda et al. 2000) Haas and Blanchard 2020
synonyms
- @ref: 20215
- synonym: Clostridium algidixylanolyticum
@ref: 4667
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Lacrimispora
species: Lacrimispora algidixylanolytica
full scientific name: Lacrimispora algidixylanolytica (Broda et al. 2000) Haas and Blanchard 2020
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4667 | PY + X MEDIUM (DSMZ Medium 104b) | yes | https://mediadive.dsmz.de/medium/104b | Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 4667 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
culture temp
- @ref: 4667
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4667
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4667
- sample type: vakuum-packed lamb
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Bottled, canned, packed food |
| #Engineered | #Food production | #Meat |
taxonmaps
- @ref: 69479
- File name: preview.99_76059.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_286;97_316;98_53193;99_76059&stattab=map
- Last taxonomy: Lacrimispora algidixylanolytica subclade
- 16S sequence: AF092549
- Sequence Identity:
- Total samples: 910
- soil counts: 205
- aquatic counts: 110
- animal counts: 200
- plant counts: 395
Safety information
risk assessment
- @ref: 4667
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4667
- description: Clostridium algidixylanolyticum 16S ribosomal RNA gene, partial sequence
- accession: AF092549
- length: 1502
- database: ena
- NCBI tax ID: 94868
GC content
- @ref: 4667
- GC-content: 38.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4667
culture collection no.: DSM 12273, SPL 73
straininfo link
- @ref: 72321
- straininfo: 49265
literature
- topic: Phylogeny
- Pubmed-ID: 10758868
- title: Clostridium algidixylanolyticum sp. nov., a psychrotolerant, xylan-degrading, spore-forming bacterium.
- authors: Broda DM, Saul DJ, Bell RG, Musgrave DR
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-50-2-623
- year: 2000
- mesh: Animals, Base Composition, Clostridium/*classification/metabolism/physiology, *Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Packaging, Food Preservation, Hydrogen-Ion Concentration, Meat/*microbiology, Mice, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sheep, Spores, Bacterial/physiology, Vacuum, Xylans/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4667 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12273) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12273 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72321 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49265.1 | StrainInfo: A central database for resolving microbial strain identifiers |