Strain identifier
BacDive ID: 279
Type strain:
Species: Aeromonas popoffii
Strain Designation: O-a-10-3
Strain history: CIP <- 1998, LMG <- I. Kersters: strain O-a-10-3
NCBI tax ID(s): 70856 (species)
General
@ref: 8207
BacDive-ID: 279
DSM-Number: 19604
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped
description: Aeromonas popoffii O-a-10-3 is a facultative anaerobe, chemoorganotroph, mesophilic bacterium that was isolated from drinking water production plant.
NCBI tax id
- NCBI tax id: 70856
- Matching level: species
strain history
@ref | history |
---|---|
8207 | <- CIP <- LMG <- I. Kersters, Univ. Gent; O-a-10-3 |
121941 | CIP <- 1998, LMG <- I. Kersters: strain O-a-10-3 |
doi: 10.13145/bacdive279.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas popoffii
- full scientific name: Aeromonas popoffii Huys et al. 1997
@ref: 8207
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas popoffii
full scientific name: Aeromonas popoffii Huys et al. 1997
strain designation: O-a-10-3
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
23259 | negative | rod-shaped | yes | |
69480 | yes | 98.792 | ||
69480 | negative | 99.995 | ||
121941 | negative | rod-shaped | yes |
colony morphology
- @ref: 23259
- incubation period: 1 day
- medium used: TSA
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8207 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
23259 | Broth | yes | ||
23259 | Trypticase Soy Agar (TSA) | yes | ||
35829 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
121941 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8207 | positive | growth | 28 | mesophilic |
23259 | positive | growth | 37 | mesophilic |
23259 | positive | optimum | 28 | mesophilic |
35829 | positive | growth | 30 | mesophilic |
121941 | positive | growth | 5-41 |
Physiology and metabolism
tolerance
- @ref: 23259
- compound: Cyanic acid
oxygen tolerance
- @ref: 121941
- oxygen tolerance: facultative anaerobe
nutrition type
- @ref: 23259
- type: chemoorganotroph
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.966 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
23259 | NaCl | no | growth | 3 % |
23259 | NaCl | no | growth | 6 % |
23259 | NaCl | no | growth | 8 % |
23259 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23259 | 15963 | ribitol | - | builds acid from |
23259 | 18333 | D-arabitol | - | builds acid from |
23259 | 17057 | cellobiose | - | builds acid from |
23259 | 28053 | melibiose | - | builds acid from |
23259 | 16634 | raffinose | - | builds acid from |
23259 | 17924 | D-sorbitol | - | builds acid from |
23259 | 65327 | D-xylose | - | builds acid from |
23259 | 16813 | galactitol | - | builds acid from |
23259 | 17113 | erythritol | - | builds acid from |
23259 | 17268 | myo-inositol | - | builds acid from |
23259 | 62345 | L-rhamnose | - | builds acid from |
23259 | 17716 | lactose | - | builds acid from |
23259 | 17814 | salicin | - | builds acid from |
23259 | 17992 | sucrose | - | builds acid from |
23259 | 16865 | gamma-aminobutyric acid | - | carbon source |
23259 | 17879 | 4-hydroxybenzoate | - | carbon source |
23259 | 30089 | acetate | - | carbon source |
23259 | 17128 | adipate | - | carbon source |
23259 | 15963 | ribitol | - | carbon source |
23259 | 18305 | arbutin | - | carbon source |
23259 | 78208 | azelaate | - | carbon source |
23259 | 16958 | beta-alanine | - | carbon source |
23259 | 16383 | cis-aconitate | - | carbon source |
23259 | 18211 | citrulline | - | carbon source |
23259 | 17057 | cellobiose | - | carbon source |
23259 | 15748 | D-glucuronate | - | carbon source |
23259 | 16634 | raffinose | - | carbon source |
23259 | 17924 | D-sorbitol | - | carbon source |
23259 | 65327 | D-xylose | - | carbon source |
23259 | 37054 | 3-hydroxybutyrate | - | carbon source |
23259 | 16813 | galactitol | - | carbon source |
23259 | 17113 | erythritol | - | carbon source |
23259 | 16236 | ethanol | - | carbon source |
23259 | 17859 | glutaric acid | - | carbon source |
23259 | 15428 | glycine | - | carbon source |
23259 | 17268 | myo-inositol | - | carbon source |
23259 | 17240 | itaconate | - | carbon source |
23259 | 16467 | L-arginine | - | carbon source |
23259 | 15603 | L-leucine | - | carbon source |
23259 | 15729 | L-ornithine | - | carbon source |
23259 | 17295 | L-phenylalanine | - | carbon source |
23259 | 17203 | L-proline | - | carbon source |
23259 | 62345 | L-rhamnose | - | carbon source |
23259 | 16828 | L-tryptophan | - | carbon source |
23259 | 17716 | lactose | - | carbon source |
23259 | 68428 | maltitol | - | carbon source |
23259 | 28053 | melibiose | - | carbon source |
23259 | 36986 | mesaconate | - | carbon source |
23259 | 30916 | 2-oxoglutarate | - | carbon source |
23259 | 18401 | phenylacetate | - | carbon source |
23259 | 17272 | propionate | - | carbon source |
23259 | 17814 | salicin | - | carbon source |
23259 | 9300 | suberic acid | - | carbon source |
23259 | 17992 | sucrose | - | carbon source |
23259 | 15708 | trans-aconitate | - | carbon source |
23259 | 27897 | tryptophan | - | energy source |
23259 | 17029 | chitin | - | hydrolysis |
23259 | 4853 | esculin | - | hydrolysis |
23259 | 16947 | citrate | + | assimilation |
23259 | 15792 | malonate | + | assimilation |
23259 | 12936 | D-galactose | + | builds acid from |
23259 | 17634 | D-glucose | + | builds acid from |
23259 | 17306 | maltose | + | builds acid from |
23259 | 16899 | D-mannitol | + | builds acid from |
23259 | 16024 | D-mannose | + | builds acid from |
23259 | 16551 | D-trehalose | + | builds acid from |
23259 | 17754 | glycerol | + | builds acid from |
23259 | 37657 | methyl D-glucoside | + | builds acid from |
23259 | 17634 | D-glucose | + | builds gas from |
23259 | 17754 | glycerol | + | builds gas from |
23259 | 15589 | L-malate | + | carbon source |
23259 | 16947 | citrate | + | carbon source |
23259 | 15824 | D-fructose | + | carbon source |
23259 | 12936 | D-galactose | + | carbon source |
23259 | 8391 | D-gluconate | + | carbon source |
23259 | 17634 | D-glucose | + | carbon source |
23259 | 17306 | maltose | + | carbon source |
23259 | 16899 | D-mannitol | + | carbon source |
23259 | 16024 | D-mannose | + | carbon source |
23259 | 16988 | D-ribose | + | carbon source |
23259 | 16551 | D-trehalose | + | carbon source |
23259 | 29806 | fumarate | + | carbon source |
23259 | 17754 | glycerol | + | carbon source |
23259 | 16977 | L-alanine | + | carbon source |
23259 | 29991 | L-aspartate | + | carbon source |
23259 | 29985 | L-glutamate | + | carbon source |
23259 | 18050 | L-glutamine | + | carbon source |
23259 | 15971 | L-histidine | + | carbon source |
23259 | 17115 | L-serine | + | carbon source |
23259 | 17895 | L-tyrosine | + | carbon source |
23259 | 24996 | lactate | + | carbon source |
23259 | 506227 | N-acetylglucosamine | + | carbon source |
23259 | 17148 | putrescine | + | carbon source |
23259 | 15361 | pyruvate | + | carbon source |
23259 | 30031 | succinate | + | carbon source |
23259 | casein | + | hydrolysis | |
23259 | 5291 | gelatin | + | hydrolysis |
23259 | 16977 | L-alanine | + | hydrolysis |
23259 | 17203 | L-proline | + | hydrolysis |
23259 | 61995 | lecithin | + | hydrolysis |
23259 | O-nitrophenyl-beta-D-galactopyranosid | + | hydrolysis | |
23259 | 91050 | p-nitrophenyl phenyl phosphonate | + | hydrolysis |
23259 | 55394 | p-nitrophenylphosphocholine | + | hydrolysis |
23259 | 28017 | starch | + | hydrolysis |
23259 | 53426 | tween 80 | + | hydrolysis |
23259 | 17632 | nitrate | + | reduction |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | + | builds acid from |
68371 | 28017 | starch | + | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | + | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | + | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
68368 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
121941 | 29864 | mannitol | + | fermentation |
121941 | 16947 | citrate | + | carbon source |
121941 | 4853 | esculin | + | hydrolysis |
121941 | 17234 | glucose | + | fermentation |
121941 | 17716 | lactose | + | fermentation |
121941 | 17632 | nitrate | + | reduction |
121941 | 16301 | nitrite | - | reduction |
121941 | 15792 | malonate | + | assimilation |
121941 | 132112 | sodium thiosulfate | - | builds gas from |
121941 | 17234 | glucose | + | degradation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is resistant | is sensitive |
---|---|---|---|---|---|
23259 | 2676 | amoxicillin | yes | yes | |
23259 | 28971 | ampicillin | yes | yes | |
23259 | 3732 | clarithromycin | yes | yes | |
23259 | 7809 | oxacillin | yes | yes | |
23259 | 18208 | penicillin g | yes | yes | |
23259 | 29687 | teicoplanin | yes | yes | |
23259 | 28001 | vancomycin | yes | yes | |
23259 | 73908 | vibriostat | yes | yes | |
23259 | 2637 | amikacin | yes | yes | |
23259 | 3508 | ceftazidime | yes | yes | |
23259 | 204928 | cefotaxime | yes | yes | |
23259 | 17698 | chloramphenicol | yes | yes | |
23259 | 17833 | gentamicin | yes | yes | |
23259 | 6104 | kanamycin | yes | yes | |
23259 | 6919 | mezlocillin | yes | yes | |
23259 | 7528 | netilmycin | yes | yes | |
23259 | 8232 | piperacillin | yes | yes | |
23259 | 9215 | spectinomycin | yes | yes | |
23259 | 27902 | tetracycline | yes | yes | |
23259 | 28864 | tobramycin | yes | yes | |
23259 | 45924 | trimethoprim | yes | yes | |
121941 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) | yes | yes | no |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23259 | 35581 | indole | no |
23259 | 15688 | acetoin | yes |
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
23259 | 15688 | acetoin | + | ||
23259 | 35581 | indole | - | ||
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | + | ||
121941 | 15688 | acetoin | + | ||
121941 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23259 | arginine dihydrolase | + | 3.5.3.6 |
23259 | catalase | + | 1.11.1.6 |
23259 | cytochrome oxidase | + | 1.9.3.1 |
23259 | DNase | + | |
23259 | lysine decarboxylase | - | 4.1.1.18 |
23259 | ornithine decarboxylase | - | 4.1.1.17 |
23259 | tryptophan deaminase | - | 4.1.99.1 |
23259 | urease | - | 3.5.1.5 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
121941 | oxidase | + | |
121941 | beta-galactosidase | + | 3.2.1.23 |
121941 | alcohol dehydrogenase | + | 1.1.1.1 |
121941 | gelatinase | + | |
121941 | amylase | + | |
121941 | DNase | + | |
121941 | caseinase | + | 3.4.21.50 |
121941 | catalase | + | 1.11.1.6 |
121941 | tween esterase | - | |
121941 | lecithinase | + | |
121941 | lipase | + | |
121941 | lysine decarboxylase | - | 4.1.1.18 |
121941 | ornithine decarboxylase | - | 4.1.1.17 |
121941 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
121941 | tryptophan deaminase | - | |
121941 | urease | - | 3.5.1.5 |
fatty acid profile
@ref fatty acid percentage ECL 54755 C12:0 4.6 12 54755 C14:0 2.8 14 54755 C15:0 0.7 15 54755 C16:0 19.7 16 54755 C17:0 0.5 17 54755 C18:0 0.4 18 54755 C13:0 iso 0.5 12.612 54755 C13:0 ISO 2OH 0.3 13.814 54755 C14:0 3OH/C16:1 ISO I 5 15.485 54755 C15:0 ANTEISO 0.4 14.711 54755 C15:0 ISO 0.7 14.621 54755 C15:0 ISO 3OH 2.5 16.135 54755 C16:1 ω7c 42.2 15.819 54755 C17:0 iso 1.3 16.629 54755 C17:1 ω8c 0.7 16.792 54755 C17:1 ω9c ISO 1.3 16.416 54755 C18:1 ω7c /12t/9t 7.8 17.824 54755 C18:1 ω9c 0.6 17.769 54755 C18:2 ω6,9c/C18:0 ANTE 2.9 17.724 54755 C19:0 CYCLO ω9c 0.6 18.87 54755 Unidentified 0.4 12.269 54755 Unidentified 0.4 13.942 54755 Unidentified 1.5 16.3 54755 Unidentified 0.4 18.084 54755 Unidentified 0.4 18.143 54755 unknown 12.555 1.4 12.555 54755 unknown 14.503 0.3 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 54755 C12:0 5.4 12 54755 C14:0 3.1 14 54755 C16:0 22.6 16 54755 C14:0 3OH/C16:1 ISO I 5.4 15.485 54755 C16:1 ω7c 48.1 15.819 54755 C17:0 iso 1.9 16.629 54755 C17:1 ω9c ISO 1.6 16.416 54755 C18:1 ω7c /12t/9t 8.9 17.824 54755 C18:2 ω6,9c/C18:0 ANTE 3.1 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 54755 C12:0 6.4 12 54755 C14:0 2.2 14 54755 C15:0 3.1 15 54755 C16:0 12.5 16 54755 C17:0 2.2 17 54755 C15:0 ANTEISO 1.2 14.711 54755 C15:0 ISO 1 14.621 54755 C15:0 ISO 3OH 14.9 16.135 54755 C16:1 ω7c 33.6 15.819 54755 C17:0 2OH 1 18.249 54755 C17:0 iso 2 16.629 54755 C17:1 ω8c 3.3 16.792 54755 C17:1 ω9c ISO 2.1 16.416 54755 C18:1 ω7c /12t/9t 3.9 17.824 54755 Unidentified 3.5 12.265 54755 Unidentified 1.6 15.29 54755 Unidentified 5.3 16.298 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121941 | - | + | + | + | + | + | - | - | + | - | + | + | - | + | - | + | - | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8207 | + | + | - | - | + | - | - | - | + | + | + | + | + | - | - | - | - | - | - | + | + | ||
8207 | + | + | - | - | + | - | - | - | + | + | + | + | + | - | - | - | - | - | - | + | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121941 | + | - | - | + | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | - | + | + | - | - | - | - | - | + | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121941 | + | + | + | + | + | - | - | - | - | + | + | - | - | - | - | - | + | + | + | + | + | - | + | - | - | - | - | - | - | - | - | + | - | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | + | + | + | - | + | - | - | - | + | - | - | + | + | + | - | + | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
8207 | drinking water production plant | Oelegem | Belgium | BEL | Europe | ||
23259 | drinking water production plants and reservoirs (sampled after flocculation-decantation) | ||||||
54755 | Drinking water production plant | Oelegem | Belgium | BEL | Europe | 1993 | |
121941 | Environment, Drinking water production plant | Oelegem | Belgium | BEL | Europe | 1993 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Plant (Factory) |
#Environmental | #Aquatic | #Freshwater |
taxonmaps
- @ref: 69479
- File name: preview.99_3322.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_3322&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: AJ224308
- Sequence Identity:
- Total samples: 39
- aquatic counts: 24
- animal counts: 12
- plant counts: 3
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8207 | 1 | Risk group (German classification) |
121941 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas popoffii strain CIP 105493 16S ribosomal RNA gene, partial sequence | JX014448 | 151 | ena | 70856 |
8207 | Aeromonas popoffii 16S rRNA gene, strain LMG 317541 | AJ224308 | 1407 | ena | 70856 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas popoffii CIP 105493 | GCA_000820025 | scaffold | ncbi | 70856 |
66792 | Aeromonas popoffii CIP 105493 | 70856.3 | wgs | patric | 70856 |
66792 | Aeromonas popoffii CIP 105493 | 2648501773 | draft | img | 70856 |
GC content
- @ref: 23259
- GC-content: 57.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.599 | no |
flagellated | yes | 91.651 | no |
gram-positive | no | 98.821 | yes |
anaerobic | no | 96.67 | no |
aerobic | yes | 88.583 | no |
halophile | no | 82.951 | no |
spore-forming | no | 94.989 | no |
glucose-util | yes | 89.981 | no |
thermophile | no | 99.278 | yes |
glucose-ferment | yes | 89.78 | no |
External links
@ref: 8207
culture collection no.: CCUG 39350, ATCC BAA 243, NCIMB 13618, DSM 19604, CCM 4708, CECT 5176, CIP 105493, LMG 17541, DSM 1904
straininfo link
- @ref: 69961
- straininfo: 10567
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9336924 | Aeromonas popoffii sp. nov., a mesophilic bacterium isolated from drinking water production plants and reservoirs. | Huys G, Kampfer P, Altwegg M, Kersters I, Lamb A, Coopman R, Luthy-Hottenstein J, Vancanneyt M, Janssen P, Kersters K | Int J Syst Bacteriol | 10.1099/00207713-47-4-1165 | 1997 | Aeromonas/chemistry/*classification/genetics/isolation & purification, Base Composition, Cluster Analysis, Culture Media/metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Microbial Sensitivity Tests, Nucleic Acid Hybridization, Phenotype, *Water Microbiology, *Water Supply | Phenotype |
Phylogeny | 16902029 | Aeromonas sharmana sp. nov., isolated from a warm spring. | Saha P, Chakrabarti T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63972-0 | 2006 | Aeromonas/chemistry/*classification/isolation & purification/physiology, India, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, *Water Microbiology | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8207 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19604) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19604 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23259 | Geert Huys, Peter Kämpfer, Martin Altwegg, Ilse Kersters, Andrew Lamb, Renata Coopman, Jacqueline Lüthy-Hottenstein, Marc Vancanneyt, Paul Janssen, Karel Kersters | 10.1099/00207713-47-4-1165 | Aeromonas popoffii sp. nov., a Mesophilic Bacterium Isolated from Drinking Water Production Plants and Reservoirs | IJSEM 47: 1165-1171 1887 | 9336924 | |
35829 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17518 | ||||
54755 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39350) | https://www.ccug.se/strain?id=39350 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69961 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID10567.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121941 | Curators of the CIP | Collection of Institut Pasteur (CIP 105493) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105493 |