Strain identifier

BacDive ID: 278

Type strain: Yes

Species: Aeromonas salmonicida subsp. achromogenes

Strain history: CIP <- 1994, NCIMB <- I.W. Smith, Aberdeen, UK: strain 6263/4/5

NCBI tax ID(s): 113288 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15603

BacDive-ID: 278

DSM-Number: 21281

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Aeromonas salmonicida subsp. achromogenes DSM 21281 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from Trout .

NCBI tax id

  • NCBI tax id: 113288
  • Matching level: subspecies

strain history

@refhistory
15603<- NCIMB <- I. W. Smith, Marine Laboratory, Aberdeen, Scottland
67770ATCC 33659 <-- NCMB 1110 <-- I. W. Smith.
122393CIP <- 1994, NCIMB <- I.W. Smith, Aberdeen, UK: strain 6263/4/5

doi: 10.13145/bacdive278.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas salmonicida subsp. achromogenes
  • full scientific name: Aeromonas salmonicida subsp. achromogenes (Smith 1963) Schubert 1967 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Necromonas achromogenes

@ref: 15603

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas salmonicida subsp. achromogenes

full scientific name: Aeromonas salmonicida subsp. achromogenes (Smith 1963) Schubert 1967

type strain: yes

Morphology

cell morphology

  • @ref: 122393
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 122393

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15603REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
35607MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122393CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
122393CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
15603positivegrowth25mesophilic
35607positivegrowth22psychrophilic
55557positivegrowth22psychrophilic
67770positivegrowth20psychrophilic
122393positivegrowth5-30
122393nogrowth37mesophilic
122393nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55557aerobe
122393facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose+fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine+hydrolysis29016
122393mannitol-fermentation29864
122393citrate-carbon source16947
122393glucose+fermentation17234
122393lactose-fermentation17716
122393nitrate+reduction17632
122393nitrite-reduction16301
122393malonate-assimilation15792
122393sodium thiosulfate-builds gas from132112
122393glucose+degradation17234

antibiotic resistance

  • @ref: 122393
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
12239335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole+
12239315688acetoin+
12239317234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23
122393oxidase+
122393beta-galactosidase+3.2.1.23
122393alcohol dehydrogenase-1.1.1.1
122393gelatinase-
122393catalase+1.11.1.6
122393lysine decarboxylase-4.1.1.18
122393ornithine decarboxylase-4.1.1.17
122393urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122393-+++-+--+--+-----+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
15603-+------+-+++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122393+---+----++++----+---------+--++---++------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122393++-++--+-++----------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
15603Trout (Salmo trutta)Salmo trutta
55557Trout (Salmo trutta)Aberdeen,River DeeUnited KingdomGBREurope
67770Trout (Salmo trutta)Salmo trutta
122393Trout, Salmo truttaRiver Dee, AberdeenUnited KingdomGBREurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes
  • Cat3: #Salmonidae

taxonmaps

  • @ref: 69479
  • File name: preview.99_485.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_485&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X60407
  • Sequence Identity:
  • Total samples: 313
  • soil counts: 16
  • aquatic counts: 156
  • animal counts: 131
  • plant counts: 10

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15603yes1Risk group (German classification)
1223931Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas salmonicida subsp. achromogenes gene for 16S rRNA, strain: JCM 7875AB0275431467ena113288
15603Aeromonas salmonicida subsp. achromogenes 16S rRNA gene, strain NCIMB 1110X604071502ena113288

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas salmonicida strain CIP 104001645.182wgspatric645
67770Aeromonas salmonicida CIP 104001GCA_006246315scaffoldncbi645

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.371no
anaerobicno97.223no
halophileno80.123no
spore-formingno95.069no
glucose-utilyes87.929no
thermophileno99.493yes
flagellatedyes92.455no
aerobicyes89.118yes
motileyes92.319no
glucose-fermentyes88.543yes

External links

@ref: 15603

culture collection no.: DSM 21281, ATCC 33659, CECT 895, CIP 104001, HAMBI 1990, JCM 7875, LMG 14900, NCIMB 1110, CCUG 42781, BCRC 80543, LMG 3781

straininfo link

  • @ref: 69960
  • straininfo: 383

literature

  • topic: Enzymology
  • Pubmed-ID: 10583691
  • title: Monoclonal antibodies against AsaP1, a major exotoxin of the fish pathogen Aeromonas salmonicida subsp. achromogenes, and their application in ELISA.
  • authors: Wagner U, Gudmundsdottir BK, Drossler K
  • journal: J Appl Microbiol
  • DOI: 10.1046/j.1365-2672.1999.00861.x
  • year: 1999
  • mesh: Aeromonas/immunology/isolation & purification/*metabolism, Animals, *Antibodies, Monoclonal/biosynthesis, Blotting, Western, Carrier Proteins/*chemistry/immunology, Electrophoresis, Polyacrylamide Gel, Enzyme-Linked Immunosorbent Assay, Exotoxins/*chemistry/immunology, Female, Mice, Mice, Inbred BALB C, Precipitin Tests
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15603Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21281)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21281
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35607Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15860
55557Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 42781)https://www.ccug.se/strain?id=42781
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69960Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID383.1StrainInfo: A central database for resolving microbial strain identifiers
122393Curators of the CIPCollection of Institut Pasteur (CIP 104001)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104001