Strain identifier
BacDive ID: 2775
Type strain:
Species: Clostridium grantii
Strain Designation: A-1
Strain history: <- D. O. Mountfort; A-1 <- D. O. Mountfort {1991}
NCBI tax ID(s): 1121316 (strain), 40575 (species)
General
@ref: 3327
BacDive-ID: 2775
DSM-Number: 8605
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridium grantii A-1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from mullet gut.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1121316 | strain |
40575 | species |
strain history
- @ref: 3327
- history: <- D. O. Mountfort; A-1 <- D. O. Mountfort {1991}
doi: 10.13145/bacdive2775.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium grantii
- full scientific name: Clostridium grantii Mountfort et al. 1996
@ref: 3327
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium grantii
full scientific name: Clostridium grantii Mountfort et al. 1996
strain designation: A-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 3327
- name: CLOSTRIDIUM GRANTII MEDIUM (DSMZ Medium 648)
- growth: yes
- link: https://mediadive.dsmz.de/medium/648
- composition: Name: CLOSTRIDIUM GRANTII MEDIUM (DSMZ Medium 648) Composition: Marine Broth 18.5 g/l D-Glucose 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.3 g/l Na2S x 9 H2O 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 3327
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
3327 | anaerobe | |
69480 | anaerobe | 98.651 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 99.447 |
Isolation, sampling and environmental information
isolation
- @ref: 3327
- sample type: mullet gut
- geographic location: Nelson, waimea Estuary
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Fishes |
#Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 3327
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3327
- description: Clostridium grantii (A1) partial 16S ribosomal RNA gene
- accession: X75272
- length: 1494
- database: ena
- NCBI tax ID: 40575
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Clostridium grantii DSM 8605 | GCA_900129965 | scaffold | ncbi | 1121316 |
66792 | Clostridium grantii DSM 8605 | 1121316.4 | wgs | patric | 1121316 |
66792 | Clostridium grantii DSM 8605 | 2585428070 | draft | img | 1121316 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 85.822 | no |
flagellated | yes | 77.266 | no |
gram-positive | yes | 66.869 | no |
anaerobic | yes | 98.835 | yes |
aerobic | no | 98.598 | yes |
halophile | no | 87.743 | no |
spore-forming | yes | 94.038 | no |
thermophile | no | 94.538 | yes |
glucose-util | yes | 90.88 | no |
glucose-ferment | yes | 62.584 | no |
External links
@ref: 3327
culture collection no.: DSM 8605, CIP 105529
straininfo link
- @ref: 72305
- straininfo: 48509
literature
- topic: Phylogeny
- Pubmed-ID: 7979871
- title: Clostridium grantii sp. nov., a new obligately anaerobic, alginolytic bacterium isolated from mullet gut.
- authors: Mountfort DO, Rainey FA, Burghardt J, Stackebrandt E
- journal: Arch Microbiol
- DOI: 10.1007/BF00314471
- year: 1994
- mesh: Alginates/metabolism, Anaerobiosis, Animals, Base Composition, Clostridium/genetics/*isolation & purification/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Digestive System/microbiology, Fermentation, Genotype, Glucuronic Acid, Hexuronic Acids, Perciformes/*microbiology, Phenotype, Phylogeny
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3327 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8605) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8605 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
72305 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48509.1 | StrainInfo: A central database for resolving microbial strain identifiers |