Strain identifier
BacDive ID: 2766
Type strain: 
Species: Clostridium chartatabidum
Strain Designation: 163
Strain history: <- R. V. Asmundson, Applied Biochemistry Division, Palmerston North, New Zealand; 163
NCBI tax ID(s): 29356 (species)
General
@ref: 2179
BacDive-ID: 2766
DSM-Number: 5482
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium chartatabidum 163 is an anaerobe, mesophilic bacterium that was isolated from ovine rumen.
NCBI tax id
- NCBI tax id: 29356
- Matching level: species
strain history
- @ref: 2179
- history: <- R. V. Asmundson, Applied Biochemistry Division, Palmerston North, New Zealand; 163
doi: 10.13145/bacdive2766.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium chartatabidum
- full scientific name: Clostridium chartatabidum Kelly et al. 1996
@ref: 2179
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium chartatabidum
full scientific name: Clostridium chartatabidum Kelly et al. 1996
strain designation: 163
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2179
- name: CLOSTRIDIUM CHARTATABIDUM MEDIUM (DSMZ Medium 523)
- growth: yes
- link: https://mediadive.dsmz.de/medium/523
- composition: Name: CLOSTRIDIUM CHARTATABIDUM MEDIUM (DSMZ Medium 523) Composition: Cellobiose 5.0 g/l Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l Yeast extract 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l Na2S x 9 H2O 0.25 g/l L-Cysteine HCl x H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH Rumen fluid Distilled water
culture temp
- @ref: 2179
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2179
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2179
- sample type: ovine rumen
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_9104.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_4331;97_5280;98_6685;99_9104&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: X71850
- Sequence Identity:
- Total samples: 3243
- soil counts: 174
- aquatic counts: 90
- animal counts: 2910
- plant counts: 69
Safety information
risk assessment
- @ref: 2179
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2179
- description: C.chartatabidum gene for 16S ribosomal RNA
- accession: X71850
- length: 1550
- database: ena
- NCBI tax ID: 29356
GC content
- @ref: 2179
- GC-content: 31.0
External links
@ref: 2179
culture collection no.: DSM 5482
straininfo link
- @ref: 72296
- straininfo: 47933
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2179 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5482) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5482 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72296 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47933.1 | StrainInfo: A central database for resolving microbial strain identifiers |