Strain identifier

BacDive ID: 2764

Type strain: Yes

Species: Acetivibrio aldrichii

Strain Designation: P-1

Strain history: <- D. R. Boone, OGC; OCM 112 <- J. C. Yang; P-1 {1986}

NCBI tax ID(s): 29353 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2508

BacDive-ID: 2764

DSM-Number: 6159

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Acetivibrio aldrichii P-1 is an anaerobe, mesophilic bacterium that was isolated from wood-fermenting anaerobic digestor.

NCBI tax id

  • NCBI tax id: 29353
  • Matching level: species

strain history

  • @ref: 2508
  • history: <- D. R. Boone, OGC; OCM 112 <- J. C. Yang; P-1 {1986}

doi: 10.13145/bacdive2764.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio aldrichii
  • full scientific name: Acetivibrio aldrichii (Yang et al. 1990) Tindall 2019
  • synonyms

    @refsynonym
    20215Clostridium aldrichii
    20215Hungateiclostridium aldrichii

@ref: 2508

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Oscillospiraceae

genus: Acetivibrio

species: Acetivibrio aldrichii

full scientific name: Acetivibrio aldrichii (Yang et al. 1990) Tindall 2019

strain designation: P-1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2508
  • name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/520
  • composition: Name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) Composition: Cellulose 9.97009 g/l (optional) Cellobiose 5.98205 g/l K2HPO4 x 3 H2O 2.89133 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l KH2PO4 1.49551 g/l (NH4)2SO4 1.29611 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0747757 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l FeSO4 x 7 H2O 0.00124626 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

  • @ref: 2508
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2508
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2508
  • sample type: wood-fermenting anaerobic digestor
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Host Body Product#Plant#Timber

taxonmaps

  • @ref: 69479
  • File name: preview.99_177274.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_196;96_1788;97_2140;98_2621;99_177274&stattab=map
  • Last taxonomy: Acetivibrio aldrichii
  • 16S sequence: X71846
  • Sequence Identity:
  • Total samples: 55
  • soil counts: 9
  • aquatic counts: 30
  • animal counts: 8
  • plant counts: 8

Safety information

risk assessment

  • @ref: 2508
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2508
  • description: C.aldrichii gene for 16S ribosomal RNA
  • accession: X71846
  • length: 1508
  • database: ena
  • NCBI tax ID: 29353

GC content

  • @ref: 2508
  • GC-content: 40.0

External links

@ref: 2508

culture collection no.: DSM 6159, ATCC 49358, OCM 112

straininfo link

  • @ref: 72294
  • straininfo: 42437

literature

  • topic: Phylogeny
  • Pubmed-ID: 2397194
  • title: Clostridium aldrichii sp. nov., a cellulolytic mesophile inhabiting a wood-fermenting anaerobic digester.
  • authors: Yang JC, Chynoweth DP, Williams DS, Li A
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-40-3-268
  • year: 1990
  • mesh: Bacteria, Anaerobic/classification/isolation & purification/metabolism/ultrastructure, Base Composition, Biodegradation, Environmental, Clostridium/classification/*isolation & purification/metabolism/ultrastructure, DNA, Bacterial/analysis, Fermentation
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
2508Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6159)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6159
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72294Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42437.1StrainInfo: A central database for resolving microbial strain identifiers