Strain identifier

BacDive ID: 2761

Type strain: Yes

Species: Anaeromicropila populeti

Strain Designation: 743A

Strain history: <- ATCC <- R. Sleat, 743A

NCBI tax ID(s): 1121330 (strain), 37658 (species)

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General

@ref: 2332

BacDive-ID: 2761

DSM-Number: 5832

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Anaeromicropila populeti 743A is an anaerobe, mesophilic bacterium that was isolated from woody biomass digestor.

NCBI tax id

NCBI tax idMatching level
1121330strain
37658species

strain history

  • @ref: 2332
  • history: <- ATCC <- R. Sleat, 743A

doi: 10.13145/bacdive2761.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Anaeromicropila
  • species: Anaeromicropila populeti
  • full scientific name: Anaeromicropila populeti (Sleat and Mah 1985) Ueki et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Clostridium populeti

@ref: 2332

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium populeti

full scientific name: Clostridium populeti Sleat and Mah 1985

strain designation: 743A

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2332
  • name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/520
  • composition: Name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) Composition: Cellulose 9.97009 g/l (optional) Cellobiose 5.98205 g/l K2HPO4 x 3 H2O 2.89133 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l KH2PO4 1.49551 g/l (NH4)2SO4 1.29611 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0747757 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l FeSO4 x 7 H2O 0.00124626 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

  • @ref: 2332
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2332
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2332
  • sample type: woody biomass digestor
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Biodegradation

taxonmaps

  • @ref: 69479
  • File name: preview.99_9105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_33;96_4332;97_5281;98_6686;99_9105&stattab=map
  • Last taxonomy: [Clostridium] populeti subclade
  • 16S sequence: X71853
  • Sequence Identity:
  • Total samples: 3784
  • soil counts: 294
  • aquatic counts: 74
  • animal counts: 3344
  • plant counts: 72

Safety information

risk assessment

  • @ref: 2332
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus paracasei clone OCM002 16S ribosomal RNA gene, partial sequenceGU425024448ena1597
2332C.populeti gene for 16S ribosomal RNAX718531512ena37658

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Clostridium] populeti strain 743A37658.4wgspatric37658
66792Lachnoclostridium populeti DSM 58322599185221draftimg37658

GC content

  • @ref: 2332
  • GC-content: 28.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes70.833no
anaerobicyes98.864yes
halophileno88.346no
spore-formingyes88.139no
glucose-utilyes87.27no
aerobicno97.695no
motileyes81.253no
flagellatedyes51.282no
thermophileno98.448yes
glucose-fermentyes71.386no

External links

@ref: 2332

culture collection no.: DSM 5832, ATCC 35295, OCM 2

straininfo link

  • @ref: 72291
  • straininfo: 40979

literature

  • topic: Phylogeny
  • Pubmed-ID: 26612136
  • title: Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater.
  • authors: Jarzembowska M, Sousa DZ, Beyer F, Zwijnenburg A, Plugge CM, Stams AJM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000791
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2332Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5832)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5832
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72291Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40979.1StrainInfo: A central database for resolving microbial strain identifiers