Strain identifier
BacDive ID: 2759
Type strain:
Species: Lacrimispora celerecrescens
Strain Designation: 18A
Strain history: DSM 5628 <-- A. Flors 18A.
NCBI tax ID(s): 29354 (species)
General
@ref: 2136
BacDive-ID: 2759
DSM-Number: 5628
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Lacrimispora celerecrescens 18A is an anaerobe, mesophilic bacterium that was isolated from methanogenic cellulose-enriched culture inoculated with cow manure.
NCBI tax id
- NCBI tax id: 29354
- Matching level: species
strain history
@ref | history |
---|---|
2136 | <- A. Flors, Instituto de Agroquimica y Tecnologia de Alimentos, C.S.I.C, Valencia, Spain; 18A <- M. Ll. Palop {1987} |
67770 | DSM 5628 <-- A. Flors 18A. |
doi: 10.13145/bacdive2759.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Lacrimispora
- species: Lacrimispora celerecrescens
- full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020
synonyms
- @ref: 20215
- synonym: Clostridium celerecrescens
@ref: 2136
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Lacrimispora
species: Lacrimispora celerecrescens
full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020
strain designation: 18A
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2136
- name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)
- growth: yes
- link: https://mediadive.dsmz.de/medium/520
- composition: Name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) Composition: Cellulose 9.97009 g/l (optional) Cellobiose 5.98205 g/l K2HPO4 x 3 H2O 2.89133 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l KH2PO4 1.49551 g/l (NH4)2SO4 1.29611 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0747757 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l FeSO4 x 7 H2O 0.00124626 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2136 | positive | growth | 35 | mesophilic |
67770 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 2136
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
2136 | methanogenic cellulose-enriched culture inoculated with cow manure | Spain | ESP | Europe |
67770 | Methanogenic cellulose-enriched culture |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Laboratory | #Lab enrichment |
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_2958.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_286;97_316;98_1698;99_2958&stattab=map
- Last taxonomy: Lacrimispora
- 16S sequence: X71848
- Sequence Identity:
- Total samples: 26414
- soil counts: 3355
- aquatic counts: 2526
- animal counts: 19545
- plant counts: 988
Safety information
risk assessment
- @ref: 2136
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Clostridium celerecrescens gene for 16S rRNA, partial sequence, strain: DSM 5628 | AB294138 | 1215 | ena | 1286362 |
2136 | C.celerecrescens gene for 16S ribosomal RNA | X71848 | 1522 | ena | 1286362 |
67770 | Clostridium celerecrescens gene for 16S ribosomal RNA, partial sequence | AB910754 | 1493 | ena | 29354 |
GC content
@ref | GC-content | method |
---|---|---|
2136 | 38.0 | |
67770 | 38 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 2136
culture collection no.: DSM 5628, CECT 954, JCM 15734, ATCC 49205
straininfo link
- @ref: 72289
- straininfo: 47961
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 11760953 | Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum. | Chamkha M, Garcia JL, Labat M | Int J Syst Evol Microbiol | 10.1099/00207713-51-6-2105 | 2001 | Bacterial Typing Techniques, Cinnamates/*metabolism, Clostridium/*classification/growth & development/*metabolism, Culture Media, Glucose/metabolism | Cultivation |
Phylogeny | 24522483 | Clostridium geopurificans strain MJ1 sp. nov., a strictly anaerobic bacterium that grows via fermentation and reduces the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). | Kwon MJ, Wei N, Millerick K, Popovic J, Finneran K | Curr Microbiol | 10.1007/s00284-014-0531-x | 2014 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Clostridium/*classification/genetics/isolation & purification/*physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Microbiology, Explosive Agents/*metabolism, Fatty Acids/analysis, Fermentation, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triazines/*metabolism, United States | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2136 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5628) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5628 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
72289 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47961.1 | StrainInfo: A central database for resolving microbial strain identifiers |