Strain identifier

BacDive ID: 2759

Type strain: Yes

Species: Lacrimispora celerecrescens

Strain Designation: 18A

Strain history: DSM 5628 <-- A. Flors 18A.

NCBI tax ID(s): 29354 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2136

BacDive-ID: 2759

DSM-Number: 5628

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Lacrimispora celerecrescens 18A is an anaerobe, mesophilic bacterium that was isolated from methanogenic cellulose-enriched culture inoculated with cow manure.

NCBI tax id

  • NCBI tax id: 29354
  • Matching level: species

strain history

@refhistory
2136<- A. Flors, Instituto de Agroquimica y Tecnologia de Alimentos, C.S.I.C, Valencia, Spain; 18A <- M. Ll. Palop {1987}
67770DSM 5628 <-- A. Flors 18A.

doi: 10.13145/bacdive2759.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Lacrimispora
  • species: Lacrimispora celerecrescens
  • full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020
  • synonyms

    • @ref: 20215
    • synonym: Clostridium celerecrescens

@ref: 2136

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Lacrimispora

species: Lacrimispora celerecrescens

full scientific name: Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020

strain designation: 18A

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2136
  • name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/520
  • composition: Name: RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520) Composition: Cellulose 9.97009 g/l (optional) Cellobiose 5.98205 g/l K2HPO4 x 3 H2O 2.89133 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l KH2PO4 1.49551 g/l (NH4)2SO4 1.29611 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0747757 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l FeSO4 x 7 H2O 0.00124626 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
2136positivegrowth35mesophilic
67770positivegrowth35mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2136
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2136methanogenic cellulose-enriched culture inoculated with cow manureSpainESPEurope
67770Methanogenic cellulose-enriched culture

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2958.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_286;97_316;98_1698;99_2958&stattab=map
  • Last taxonomy: Lacrimispora
  • 16S sequence: X71848
  • Sequence Identity:
  • Total samples: 26414
  • soil counts: 3355
  • aquatic counts: 2526
  • animal counts: 19545
  • plant counts: 988

Safety information

risk assessment

  • @ref: 2136
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium celerecrescens gene for 16S rRNA, partial sequence, strain: DSM 5628AB2941381215ena1286362
2136C.celerecrescens gene for 16S ribosomal RNAX718481522ena1286362
67770Clostridium celerecrescens gene for 16S ribosomal RNA, partial sequenceAB9107541493ena29354

GC content

@refGC-contentmethod
213638.0
6777038thermal denaturation, midpoint method (Tm)

External links

@ref: 2136

culture collection no.: DSM 5628, CECT 954, JCM 15734, ATCC 49205

straininfo link

  • @ref: 72289
  • straininfo: 47961

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism11760953Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.Chamkha M, Garcia JL, Labat MInt J Syst Evol Microbiol10.1099/00207713-51-6-21052001Bacterial Typing Techniques, Cinnamates/*metabolism, Clostridium/*classification/growth & development/*metabolism, Culture Media, Glucose/metabolismCultivation
Phylogeny24522483Clostridium geopurificans strain MJ1 sp. nov., a strictly anaerobic bacterium that grows via fermentation and reduces the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).Kwon MJ, Wei N, Millerick K, Popovic J, Finneran KCurr Microbiol10.1007/s00284-014-0531-x2014Anaerobiosis, Bacterial Typing Techniques, Base Composition, Clostridium/*classification/genetics/isolation & purification/*physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Microbiology, Explosive Agents/*metabolism, Fatty Acids/analysis, Fermentation, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triazines/*metabolism, United StatesMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2136Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5628)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5628
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72289Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47961.1StrainInfo: A central database for resolving microbial strain identifiers