Strain identifier
BacDive ID: 2750
Type strain: 
Species: Clostridium thermosuccinogenes
Strain Designation: ID
Strain history: <- J. C. Gottschal, Univ. Groningen, The Netherlands; ID <- J. C. Gottschal and W. J. Drent {1989}
NCBI tax ID(s): 84032 (species)
version 8.1 (current version)
General
@ref: 2192
BacDive-ID: 2750
DSM-Number: 5808
keywords: genome sequence, Bacteria, anaerobe, thermophilic
description: Clostridium thermosuccinogenes ID is an anaerobe, thermophilic bacterium that was isolated from beet pulp, sugar refinery.
NCBI tax id
- NCBI tax id: 84032
- Matching level: species
strain history
- @ref: 2192
- history: <- J. C. Gottschal, Univ. Groningen, The Netherlands; ID <- J. C. Gottschal and W. J. Drent {1989}
doi: 10.13145/bacdive2750.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium thermosuccinogenes
- full scientific name: Clostridium thermosuccinogenes Drent et al. 1995
synonyms
- @ref: 20215
- synonym: Pseudoclostridium thermosuccinogenes
@ref: 2192
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium thermosuccinogenes
full scientific name: Clostridium thermosuccinogenes Drent et al. 1995
strain designation: ID
type strain: no
Culture and growth conditions
culture medium
- @ref: 2192
- name: PSEUDOCLOSTRIDIUM MEDIUM (DSMZ Medium 502)
- growth: yes
- link: https://mediadive.dsmz.de/medium/502
- composition: Name: PSEUDOCLOSTRIDIUM MEDIUM (DSMZ Medium 502) Composition: Inulin 4.99002 g/l Na2HPO4 2.65469 g/l Na2CO3 1.49701 g/l NaCl 1.1976 g/l MgCl2 x 6 H2O 0.399202 g/l KCl 0.299401 g/l NH4Cl 0.269461 g/l KH2PO4 0.209581 g/l Na2S x 9 H2O 0.149701 g/l CaCl2 x 2 H2O 0.149701 g/l Na2SO4 0.0998004 g/l Casamino acids 0.0299401 g/l Yeast extract 0.0299401 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 2192
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2192
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2192
- sample type: beet pulp, sugar refinery
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Plant
- Cat3: #Fruit (Seed)
Safety information
risk assessment
- @ref: 2192
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoclostridium thermosuccinogenes DSM 5808 | GCA_002896955 | contig | ncbi | 84032 |
| 66792 | [Clostridium] thermosuccinogenes strain DSM 5808 | 84032.4 | wgs | patric | 84032 |
| 66792 | Pseudoclostridium thermosuccinogenes DSM 5808 | 2795385490 | draft | img | 84032 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 73.062 | no |
| flagellated | no | 72.321 | no |
| gram-positive | yes | 66.154 | no |
| anaerobic | yes | 99.492 | yes |
| halophile | no | 94.527 | no |
| spore-forming | yes | 81.984 | no |
| thermophile | yes | 99.547 | yes |
| glucose-util | yes | 84.263 | no |
| aerobic | no | 99.198 | yes |
| glucose-ferment | yes | 60.556 | no |
External links
@ref: 2192
culture collection no.: DSM 5808
straininfo link
- @ref: 72280
- straininfo: 48005
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2192 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5808) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5808 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 72280 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48005.1 | StrainInfo: A central database for resolving microbial strain identifiers |