Strain identifier
BacDive ID: 275
Type strain:
Species: Aeromonas salmonicida
Strain Designation: 20
Strain history: CIP <- 1988, NCIB <- I.W. Smith: strain 20 <- Public Hlth. Lab., Carmarthen, Wales, UK
NCBI tax ID(s): 645 (species)
General
@ref: 8224
BacDive-ID: 275
DSM-Number: 19634
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen
description: Aeromonas salmonicida 20 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from salmon.
NCBI tax id
- NCBI tax id: 645
- Matching level: species
strain history
@ref | history |
---|---|
8224 | <- NCIMB <- I. W. Smith, Marine Laboratory <- Public Health Laboratory, Carmarthen, Wales |
67770 | ATCC 33658 <-- NCMB 1102 <-- I. W. Smith <-- Public Health Lab., Carmarthen, Wales, UK. |
122396 | CIP <- 1988, NCIB <- I.W. Smith: strain 20 <- Public Hlth. Lab., Carmarthen, Wales, UK |
doi: 10.13145/bacdive275.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas salmonicida
- full scientific name: Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium salmonicida
@ref: 8224
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas salmonicida subsp. salmonicida
full scientific name: Aeromonas salmonicida subsp. salmonicida (Lehmann and Neumann 1896) Schubert 1967
strain designation: 20
type strain: yes
Morphology
cell morphology
- @ref: 122396
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8224 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
41734 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122396 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
122396 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8224 | positive | growth | 28 | mesophilic |
41734 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 20 | psychrophilic |
122396 | positive | growth | 22-30 | |
122396 | no | growth | 5 | psychrophilic |
122396 | no | growth | 10 | psychrophilic |
122396 | no | growth | 37 | mesophilic |
122396 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 122396
- oxygen tolerance: facultative anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
122396 | NaCl | positive | growth | 0-4 % |
122396 | NaCl | no | growth | 6 % |
122396 | NaCl | no | growth | 8 % |
122396 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
122396 | 17632 | nitrate | + | reduction |
122396 | 16301 | nitrite | - | reduction |
122396 | 132112 | sodium thiosulfate | - | builds gas from |
antibiotic resistance
- @ref: 122396
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
122396 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
122396 | 15688 | acetoin | - | ||
122396 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | beta-galactosidase | - | 3.2.1.23 |
122396 | oxidase | + | |
122396 | beta-galactosidase | + | 3.2.1.23 |
122396 | alcohol dehydrogenase | - | 1.1.1.1 |
122396 | amylase | + | |
122396 | catalase | - | 1.11.1.6 |
122396 | tween esterase | + | |
122396 | lysine decarboxylase | + | 4.1.1.18 |
122396 | ornithine decarboxylase | - | 4.1.1.17 |
122396 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122396 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8224 | - | + | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | + |
8224 | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | + |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8224 | + | - | + | + | - | + | + | + | + | - | - | + | + | + | + | + | - | + | - | - | + |
8224 | + | - | + | + | - | + | + | + | + | - | - | + | + | + | + | + | - | + | - | - | + |
8224 | + | - | + | + | - | + | + | + | + | - | - | + | + | + | + | + | - | + | - | - | + |
8224 | + | - | + | + | - | + | + | + | + | - | - | + | + | + | + | + | - | + | - | - | + |
8224 | + | - | + | - | - | + | + | + | + | - | - | + | + | + | + | - | - | + | - | - | + |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122396 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | host species |
---|---|---|---|---|---|---|
8224 | salmon | River Cletter | United Kingdom | GBR | Europe | |
67770 | Salmon (Salmo salar) | Salmo salar | ||||
122396 | Animal, Fish, salmon | Cletter River | United Kingdom | GBR | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Fishes | |
#Host | #Fishes | #Salmonidae |
taxonmaps
- @ref: 69479
- File name: preview.99_485.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_485&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: X60405
- Sequence Identity:
- Total samples: 313
- soil counts: 16
- aquatic counts: 156
- animal counts: 131
- plant counts: 10
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
8224 | yes | 1 | Risk group (German classification) |
122396 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequence | AY987751 | 1510 | ena | 29491 |
20218 | Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence | EF373989 | 536 | ena | 645 |
20218 | Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence | EF373990 | 518 | ena | 645 |
20218 | Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequence | EF373991 | 517 | ena | 645 |
20218 | Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | EF373992 | 513 | ena | 645 |
20218 | Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequence | JX014449 | 151 | ena | 29491 |
20218 | Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequence | KC244777 | 1287 | ena | 29491 |
20218 | Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102 | X60405 | 1503 | ena | 29491 |
20218 | A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNA | X71836 | 1283 | ena | 29491 |
8224 | A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNA | X74681 | 1460 | ena | 29491 |
67770 | Aeromonas salmonicida subsp. salmonicida gene for 16S rRNA, strain: JCM 7874 | AB027541 | 1467 | ena | 29491 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas salmonicida strain NCTC12959 | 645.114 | wgs | patric | 645 |
66792 | Aeromonas salmonicida subsp. salmonicida CIP 103209 | 29491.11 | wgs | patric | 29491 |
66792 | Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 | 29491.22 | wgs | patric | 29491 |
66792 | Aeromonas salmonicida salmonicida ATCC 33658 | 2744054639 | draft | img | 29491 |
66792 | Aeromonas salmonicida salmonicida CIP 103209 | 2648501469 | draft | img | 29491 |
67770 | Aeromonas salmonicida subsp. salmonicida CIP 103209 | GCA_000820065 | scaffold | ncbi | 29491 |
67770 | Aeromonas salmonicida subsp. salmonicida ATCC 33658 | GCA_001643305 | contig | ncbi | 29491 |
67770 | Aeromonas salmonicida NCTC12959 | GCA_900445115 | contig | ncbi | 645 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.852 | no |
anaerobic | no | 96.086 | no |
halophile | no | 89.435 | no |
spore-forming | no | 95.014 | no |
glucose-util | yes | 88.328 | no |
thermophile | no | 99.57 | yes |
flagellated | yes | 92.588 | no |
aerobic | yes | 85.431 | no |
motile | yes | 89.77 | no |
glucose-ferment | yes | 88.253 | yes |
External links
@ref: 8224
culture collection no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959, GTC 02802, IMET 11051, KCTC 12266, DSM 3241
straininfo link
- @ref: 69957
- straininfo: 388
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 12958263 | Antimicrobial susceptibility testing of aquatic bacteria: quality control disk diffusion ranges for Escherichia coli ATCC 25922 and Aeromonas salmonicida subsp. salmonicida ATCC 33658 at 22 and 28 degrees C. | Miller RA, Walker RD, Baya A, Clemens K, Coles M, Hawke JP, Henricson BE, Hsu HM, Mathers JJ, Oaks JL, Papapetropoulou M, Reimschuessel R | J Clin Microbiol | 10.1128/JCM.41.9.4318-4323.2003 | 2003 | Aeromonas/*drug effects, Animals, Diffusion, Escherichia coli/*drug effects, Microbial Sensitivity Tests/*standards, Quality Control, Temperature, *Water Microbiology | |
14735937 | Association of Type III secretion genes with virulence of Aeromonas salmonicida subsp. salmonicida. | Burr SE, Wahli T, Segner H, Pugovkin D, Frey J | Dis Aquat Organ | 10.3354/dao057167 | 2003 | Aeromonas/*genetics/*pathogenicity, Animals, Blotting, Southern, DNA Primers, Fish Diseases/*microbiology, Gram-Negative Bacterial Infections/*mortality, Oncorhynchus mykiss, Virulence, Virulence Factors/*genetics | ||
Pathogenicity | 15997819 | Standardization of a broth microdilution susceptibility testing method to determine minimum inhibitory concentrations of aquatic bacteria. | Miller RA, Walker RD, Carson J, Coles M, Coyne R, Dalsgaard I, Gieseker C, Hsu HM, Mathers JJ, Papapetropoulou M, Petty B, Teitzel C, Reimschuessel R | Dis Aquat Organ | 10.3354/dao064211 | 2005 | Aeromonas salmonicida/*drug effects, Anti-Bacterial Agents/*toxicity, Culture Media/chemistry, Escherichia coli/*drug effects, Microbial Sensitivity Tests/*methods/*standards, Quality Control, Reproducibility of Results, Temperature | Cultivation |
Enzymology | 19447190 | Isolation and cDNA cloning of an antibacterial L-amino acid oxidase from the skin mucus of the great sculpin Myoxocephalus polyacanthocephalus. | Nagashima Y, Tsukamoto C, Kitani Y, Ishizaki S, Nagai H, Yanagimoto T | Comp Biochem Physiol B Biochem Mol Biol | 10.1016/j.cbpb.2009.05.006 | 2009 | Amino Acid Sequence, Animals, Anti-Bacterial Agents/*isolation & purification/metabolism/pharmacology, Bacteria/drug effects, Cloning, Molecular, DNA, Complementary/*genetics, Fishes/*genetics, L-Amino Acid Oxidase/*genetics/*isolation & purification/metabolism/pharmacology, Molecular Sequence Data, Mucus/*enzymology, Sequence Alignment, *Skin | Phylogeny |
Phylogeny | 20298453 | First description of atypical furunculosis in freshwater farmed Atlantic salmon, Salmo salar L., in Chile. | Godoy M, Gherardelli V, Heisinger A, Fernandez J, Olmos P, Ovalle L, Ilardi P, Avendano-Herrera R | J Fish Dis | 10.1111/j.1365-2761.2010.01142.x | 2010 | Aeromonas salmonicida/*genetics/isolation & purification, Animals, Chile, Fish Diseases/*microbiology/*pathology, *Fresh Water, Furunculosis/microbiology/pathology/*veterinary, Genes, Bacterial/genetics, Molecular Sequence Data, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Salmo salar | Genetics |
Pathogenicity | 23324417 | Quality control ranges for testing broth microdilution susceptibility of Flavobacterium columnare and F. psychrophilum to nine antimicrobials. | Gieseker CM, Mayer TD, Crosby TC, Carson J, Dalsgaard I, Darwish AM, Gaunt PS, Gao DX, Hsu HM, Lin TL, Oaks JL, Pyecroft M, Teitzel C, Somsiri T, Wu CC | Dis Aquat Organ | 10.3354/dao02527 | 2012 | Animals, Anti-Bacterial Agents/*pharmacology, *Drug Resistance, Bacterial, Flavobacterium/*drug effects, Microbial Sensitivity Tests/*methods, Reproducibility of Results, Sensitivity and Specificity | |
Pathogenicity | 25667335 | Marine Lactobacillus pentosus H16 protects Artemia franciscana from Vibrio alginolyticus pathogenic effects. | Garces ME, Sequeiros C, Olivera NL | Dis Aquat Organ | 10.3354/dao02815 | 2015 | Animals, Antibiosis/physiology, Artemia/*microbiology, Host-Pathogen Interactions, Lactobacillus/*physiology, Vibrio alginolyticus/*physiology | |
25773973 | Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections. | Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR | Appl Microbiol Biotechnol | 10.1007/s00253-015-6476-6 | 2015 | Bacterial Physiological Phenomena/*radiation effects, Biological Specimen Banks, Freeze Drying/*methods, Microbial Viability/*radiation effects, Preservation, Biological/*methods | ||
Cultivation | 26949840 | Development of Similar Broth Microdilution Methods to Determine the Antimicrobial Susceptibility of Flavobacterium columnare and F. psychrophilum. | Gieseker CM, Crosby TC, Mayer TD, Bodeis SM, Stine CB | J Aquat Anim Health | 10.1080/08997659.2015.1105878 | 2016 | Animals, Anti-Bacterial Agents/*pharmacology, Bacteriological Techniques/*methods, Culture Media, Dose-Response Relationship, Drug, *Drug Resistance, Bacterial, Flavobacterium/*drug effects, Horses/blood, Microbial Sensitivity Tests | Pathogenicity |
Genetics | 28982999 | Draft Genome Sequence of the Type Strain Aeromonas salmonicida subsp. salmonicida ATCC 33658. | Valderrama K, Soto-Davila M, Santander J | Genome Announc | 10.1128/genomeA.01064-17 | 2017 | ||
29259599 | Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing. | Bartkova S, Leekitcharoenphon P, Aarestrup FM, Dalsgaard I | Front Microbiol | 10.3389/fmicb.2017.02411 | 2017 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8224 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19634) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19634 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41734 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14982 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69957 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID388.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122396 | Curators of the CIP | Collection of Institut Pasteur (CIP 103209) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103209 |