Strain identifier

BacDive ID: 275

Type strain: Yes

Species: Aeromonas salmonicida

Culture col. no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8224

BacDive-ID: 275

DSM-Number: 19634

keywords: animal pathogen, mesophilic, Bacteria, 16S sequence, genome sequence

description: Aeromonas salmonicida DSM 19634 is a mesophilic animal pathogen that was isolated from salmon.

strain history: <- NCIMB <- I. W. Smith, Marine Laboratory <- Public Health Laboratory, Carmarthen, Wales

doi: 10.13145/bacdive275.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas salmonicida
  • full scientific name: Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacterium salmonicida

@ref: 8224

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas salmonicida

full scientific name: Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8224REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1a.pdf
41734MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
8224positivegrowth28mesophilic
41734positivegrowth30mesophilic

Physiology and metabolism

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
8224-+--------+++-------+
8224----------+++-------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8224+-++-++++--+++++-+--+
8224+-++-++++--+++++-+--+
8224+-++-++++--+++++-+--+
8224+-++-++++--+++++-+--+
8224+-+--++++--++++--+--+

Isolation, sampling and environmental information

isolation

  • @ref: 8224
  • sample type: salmon
  • geographic location: River Cletter
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes
  • Cat3: #Salmonidae

Safety information

risk assessment

  • @ref: 8224
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas salmonicida subsp. salmonicida strain CECT 894T 16S ribosomal RNA gene, complete sequenceAY9877511510ena29491
20218Aeromonas salmonicida clone 2 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373989536ena645
20218Aeromonas salmonicida clone 3 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373990518ena645
20218Aeromonas salmonicida strain ATCC 33658 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373991517ena645
20218Aeromonas salmonicida strain ATCC 33658 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373992513ena645
20218Aeromonas salmonicida subsp. salmonicida strain CIP 103209 16S ribosomal RNA gene, partial sequenceJX014449151ena29491
20218Aeromonas salmonicida subsp. salmonicida strain ATCC 33658 16S ribosomal RNA gene, complete sequenceKC2447771287ena29491
20218Aeromonas salmonicida subsp. salmonicida 16S rRNA gene, strain NCIMB 1102X604051503ena29491
20218A.salmonicida (ssp. NCMB 1102) gene for 16S ribosomal RNAX718361283ena29491
8224A.salmonicida salmonicida (ATCC 33658T) gene for 16S ribosomal RNAX746811460ena29491

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas salmonicida O23AGCA_002180335completencbi645
66792Aeromonas salmonicida A527GCA_002764135completencbi645
66792Aeromonas salmonicida S68GCA_002214265completencbi645
66792Aeromonas salmonicida S121GCA_002214245completencbi645
66792Aeromonas salmonicida S44GCA_002214305completencbi645
66792Aeromonas salmonicida SRW-OG1GCA_012931585completencbi645
66792Aeromonas salmonicida NCTC12959GCA_900445115contigncbi645
66792Aeromonas salmonicida subsp. salmonicida CIP 103209GCA_000820065scaffoldncbi29491
66792Aeromonas salmonicida subsp. salmonicida ATCC 33658GCA_001643305contigncbi29491
66792Aeromonas salmonicida 3012STDY7122732GCA_900683655contigncbi645
66792Aeromonas salmonicida 947CGCA_003947395scaffoldncbi645
66792Aeromonas salmonicida AJ83GCA_003947355contigncbi645
66792Aeromonas salmonicida Y567GCA_001466435contigncbi645
66792Aeromonas salmonicida ECFood+05GCA_002317045contigncbi645
66792Aeromonas salmonicida JF2480GCA_009725185contigncbi645
66792Aeromonas salmonicida 17GCA_003259515scaffoldncbi645
66792Aeromonas salmonicida A308GCA_003947375contigncbi645
66792Aeromonas salmonicida Y47GCA_001481535scaffoldncbi645
66792Aeromonas salmonicida Z5-5GCA_003265515scaffoldncbi645
66792Aeromonas salmonicida Z5-5GCA_900491655scaffoldncbi645
66792Aeromonas salmonicida Y577GCA_001481545scaffoldncbi645
66792Aeromonas salmonicida YKGCA_002093675scaffoldncbi645
66792Aeromonas salmonicida CIP 107036GCA_006243325scaffoldncbi645
66792Aeromonas salmonicida M18076-11GCA_002883135contigncbi645
66792Aeromonas salmonicida BGGCA_002093695scaffoldncbi645
66792Aeromonas salmonicida UBA8809GCA_003505635scaffoldncbi645
66792Aeromonas salmonicida UBA10746GCA_003483825scaffoldncbi645
66792Aeromonas salmonicida645.58plasmidpatric645
66792Aeromonas salmonicida CBA100645.8wgspatric645
66792Aeromonas salmonicida strain 17645.112wgspatric645
66792Aeromonas salmonicida strain 947C645.122wgspatric645
66792Aeromonas salmonicida strain A308645.121wgspatric645
66792Aeromonas salmonicida strain A527645.50completepatric645
66792Aeromonas salmonicida strain AJ83645.120wgspatric645
66792Aeromonas salmonicida strain BG645.41wgspatric645
66792Aeromonas salmonicida strain CIP 107036645.179wgspatric645
66792Aeromonas salmonicida strain ECFood+05645.46wgspatric645
66792Aeromonas salmonicida strain JF2480645.192wgspatric645
66792Aeromonas salmonicida strain M18076-11645.111wgspatric645
66792Aeromonas salmonicida strain NCTC12959645.114wgspatric645
66792Aeromonas salmonicida strain S121645.43completepatric645
66792Aeromonas salmonicida strain S121645.63plasmidpatric645
66792Aeromonas salmonicida strain S121645.60plasmidpatric645
66792Aeromonas salmonicida strain S121645.62plasmidpatric645
66792Aeromonas salmonicida strain S121645.59plasmidpatric645
66792Aeromonas salmonicida strain S121645.61plasmidpatric645
66792Aeromonas salmonicida strain S44645.64plasmidpatric645
66792Aeromonas salmonicida strain S44645.67plasmidpatric645
66792Aeromonas salmonicida strain S44645.45completepatric645
66792Aeromonas salmonicida strain S44645.66plasmidpatric645
66792Aeromonas salmonicida strain S44645.65plasmidpatric645
66792Aeromonas salmonicida strain S44645.68plasmidpatric645
66792Aeromonas salmonicida strain S68645.44completepatric645
66792Aeromonas salmonicida strain S68645.72plasmidpatric645
66792Aeromonas salmonicida strain S68645.71plasmidpatric645
66792Aeromonas salmonicida strain S68645.69plasmidpatric645
66792Aeromonas salmonicida strain S68645.70plasmidpatric645
66792Aeromonas salmonicida strain UBA10746645.117wgspatric645
66792Aeromonas salmonicida strain UBA8809645.118wgspatric645
66792Aeromonas salmonicida strain Y47645.13wgspatric645
66792Aeromonas salmonicida strain Y567645.12wgspatric645
66792Aeromonas salmonicida strain Y577645.14wgspatric645
66792Aeromonas salmonicida strain YK645.40wgspatric645
66792Aeromonas salmonicida strain Z5-5645.113wgspatric645
66792Aeromonas salmonicida strain Z5-5645.115wgspatric645
66792Aeromonas salmonicida subsp. salmonicida CIP 10320929491.11wgspatric29491
66792Aeromonas salmonicida subsp. salmonicida strain ATCC 3365829491.22wgspatric29491
66792Aeromonas salmonicida 172773857659permanentimg645

External links

@ref: 8224

culture collection no.: DSM 19634, ATCC 33658, CAIM 346, CECT 894, CIP 103209, JCM 7874, LMG 3780, NCIMB 1102, NCTC 12959

straininfo link

@refpassport
20218http://www.straininfo.net/strains/724532
20218http://www.straininfo.net/strains/1923
20218http://www.straininfo.net/strains/621040
20218http://www.straininfo.net/strains/289363
20218http://www.straininfo.net/strains/148449
20218http://www.straininfo.net/strains/183288
20218http://www.straininfo.net/strains/1922
20218http://www.straininfo.net/strains/205549
20218http://www.straininfo.net/strains/335446

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8224Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19634)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19634
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41734Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14982
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)