Strain identifier

BacDive ID: 2749

Type strain: Yes

Species: Clostridium thermosuccinogenes

Strain Designation: IC

Culture col. no.: DSM 5807

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2191

BacDive-ID: 2749

DSM-Number: 5807

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, thermophilic

description: Clostridium thermosuccinogenes IC is an anaerobe, thermophilic bacterium that was isolated from beet pulp, sugar refinery.

strain history: <- J. C. Gottschal, Univ. Groningen, The Netherlands; IC <- W. J. Drent {1989}

doi: 10.13145/bacdive2749.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium thermosuccinogenes
  • full scientific name: Clostridium thermosuccinogenes Drent et al. 1995
  • synonyms

    • @ref: 20215
    • synonym: Pseudoclostridium thermosuccinogenes

@ref: 2191

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium thermosuccinogenes

full scientific name: Clostridium thermosuccinogenes Drent et al. 1995

strain designation: IC

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
2191THERMOCLOSTRIDIUM (A-GÖ) MEDIUM (DSMZ Medium 326), anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium326.pdf
2191PSEUDOCLOSTRIDIUM MEDIUM (DSMZ Medium 502), anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium502.pdf

culture temp

  • @ref: 2191
  • growth: positive
  • type: growth
  • temperature: 60
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2191
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2191
  • sample type: beet pulp, sugar refinery
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

Safety information

risk assessment

  • @ref: 2191
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2191
  • description: Clostridium thermosuccinogenes 16S rRNA gene, partial, strain DSM 5807
  • accession: Y18180
  • length: 1640
  • database: ena
  • NCBI tax ID: 84032

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoclostridium thermosuccinogenes DSM 5807GCA_002896855completencbi84032
66792[Clostridium] thermosuccinogenes strain DSM 580784032.3completepatric84032

GC content

  • @ref: 2191
  • GC-content: 35.9

External links

@ref: 2191

culture collection no.: DSM 5807

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/159451

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2191Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5807)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5807
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)