Strain identifier
BacDive ID: 2744
Type strain: 
Species: Clostridium disporicum
Strain Designation: DS1
Strain history: <- NCIMB <- N. Horn, DS1
NCBI tax ID(s): 84024 (species)
version 8.1 (current version)
General
@ref: 2089
BacDive-ID: 2744
DSM-Number: 5521
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium disporicum DS1 is an anaerobe, mesophilic bacterium that was isolated from rat caecum.
NCBI tax id
- NCBI tax id: 84024
- Matching level: species
strain history
- @ref: 2089
- history: <- NCIMB <- N. Horn, DS1
doi: 10.13145/bacdive2744.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium disporicum
- full scientific name: Clostridium disporicum Horn 1987
@ref: 2089
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium disporicum
full scientific name: Clostridium disporicum Horn 1987
strain designation: DS1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2089
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2089 | positive | growth | 37 | mesophilic |
| 63316 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 2089 | anaerobe |
| 63316 | anaerobe |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date | geographic location |
|---|---|---|---|---|---|---|
| 2089 | rat caecum | United Kingdom | GBR | Europe | ||
| 63316 | Rat cecum | United Kingdom | GBR | Europe | 1987 | Norwich |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 2089
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium disporicum strain DSM 5521 16S ribosomal RNA gene, partial sequence | HM245940 | 828 | ena | 84024 |
| 2089 | Clostridium disporicum 16S rRNA gene, partial, strain DSM 5521 | Y18176 | 1472 | ena | 84024 |
GC content
- @ref: 2089
- GC-content: 38.0-41.0
External links
@ref: 2089
culture collection no.: DSM 5521, ATCC 43838, NCIMB 12424, CCUG 66315
straininfo link
- @ref: 72274
- straininfo: 42077
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2089 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5521) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5521 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 63316 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 66315) | https://www.ccug.se/strain?id=66315 | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 72274 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42077.1 | StrainInfo: A central database for resolving microbial strain identifiers |