Strain identifier

BacDive ID: 2717

Type strain: Yes

Species: Acetoanaerobium sticklandii

Strain Designation: HF

Strain history: ATCC 12662 <-- A. C. Schwartz <-- T. C. Stadtman.

NCBI tax ID(s): 499177 (strain), 1511 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 263

BacDive-ID: 2717

DSM-Number: 519

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive

description: Acetoanaerobium sticklandii HF is an anaerobe, spore-forming, mesophilic bacterium that was isolated from black mud.

NCBI tax id

NCBI tax idMatching level
499177strain
1511species

strain history

@refhistory
263<- A. C. Schwartz, Univ. Bonn, Germany; HF <- T. C. Stadtman, National Institute of Health, Bethesda, Md., USA
67770ATCC 12662 <-- A. C. Schwartz <-- T. C. Stadtman.

doi: 10.13145/bacdive2717.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptostreptococcaceae
  • genus: Acetoanaerobium
  • species: Acetoanaerobium sticklandii
  • full scientific name: Acetoanaerobium sticklandii (Stadtman and McClung 1957) Galperin et al. 2016
  • synonyms

    • @ref: 20215
    • synonym: Clostridium sticklandii

@ref: 263

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptostreptococcaceae

genus: Acetoanaerobium

species: Acetoanaerobium sticklandii

full scientific name: Acetoanaerobium sticklandii (Stadtman and McClung 1957) Galperin et al. 2016

strain designation: HF

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 99.72

Culture and growth conditions

culture medium

  • @ref: 263
  • name: ACETOANAEROBIUM MEDIUM (DSMZ Medium 38)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/38
  • composition: Name: ACETOANAEROBIUM MEDIUM (DSMZ Medium 38) Composition: Tryptone 20.0 g/l Yeast extract 10.0 g/l K2HPO4 1.04 g/l KH2PO4 0.68 g/l Na2S x 9 H2O 0.15 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
263positivegrowth35mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
263anaerobe
69480anaerobe99.68

spore formation

@refspore formationconfidence
69481yes99
69480no96.141

compound production

  • @ref: 263
  • compound: glycine reductase

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25060black mudeast shore of San Francisco BayUSAUSANorth America
263mud watereast shore of San Francisco BayUSAUSANorth America
67770Mud water

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1599.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15797;96_907;97_1057;98_1263;99_1599&stattab=map
  • Last taxonomy: Acetoanaerobium sticklandii
  • 16S sequence: LC053841
  • Sequence Identity:
  • Total samples: 20854
  • soil counts: 1323
  • aquatic counts: 13161
  • animal counts: 6000
  • plant counts: 370

Safety information

risk assessment

  • @ref: 263
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770[Clostridium] sticklandii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1433LC0538411388ena1511
67770C.sticklandii small subunit ribosomal RNAM264941476ena1511

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetoanaerobium sticklandii DSM 519GCA_000196455completencbi1511
66792Clostridium sticklandii DSM 519499177.3completepatric499177
66792Acetoanaerobium sticklandii DSM 519649633033completeimg1511

GC content

@refGC-content
2506033.3
26331.0
6777031

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
gram-positiveyes71.928no
anaerobicyes98.862yes
halophileno87.852no
spore-formingyes87.029no
glucose-utilyes86.689no
aerobicno97.551yes
thermophileno95.391no
motileyes88.044no
flagellatedyes50.639no
glucose-fermentyes51.307no

External links

@ref: 263

culture collection no.: DSM 519, ATCC 12662, CCUG 9281, JCM 1433, NCIMB 10654, BCRC 14485

straininfo link

  • @ref: 72245
  • straininfo: 35630

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25948619Acetoanaerobium pronyense sp. nov., an anaerobic alkaliphilic bacterium isolated from a carbonate chimney of the Prony Hydrothermal Field (New Caledonia).Bes M, Merrouch M, Joseph M, Quemeneur M, Payri C, Pelletier B, Ollivier B, Fardeau ML, Erauso G, Postec AInt J Syst Evol Microbiol10.1099/ijs.0.0003072015Bacterial Typing Techniques, Base Composition, Carbonates, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Hydrothermal Vents/*microbiology, Molecular Sequence Data, New Caledonia, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics31425748Functional prediction, characterization, and categorization of operome from Acetoanaerobium sticklandii DSM 519.Sangavai C, Prathiviraj R, Chellapandi PAnaerobe10.1016/j.anaerobe.2019.1020882019Amino Acid Motifs, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Clostridiales/*physiology, Computational Biology/methods, Conserved Sequence, Energy Metabolism, Gene Expression Regulation, Bacterial, *Genome, Bacterial, *Genomics/methods, Molecular Sequence Annotation, *Operon, Stress, Physiological, Transcription, GeneticMetabolism
Metabolism31471743A metabolic study to decipher amino acid catabolism-directed biofuel synthesis in Acetoanaerobium sticklandii DSM 519.Sangavai C, Chellapandi PAmino Acids10.1007/s00726-019-02777-42019Acetic Acid/metabolism, Acetone/metabolism, Amino Acids/chemistry/*metabolism, *Biofuels, Butanols/metabolism, Butyric Acid/metabolism, Chromatography, High Pressure Liquid, Clostridiales/*metabolism, Ethanol/metabolism, Fermentation, Gas Chromatography-Mass Spectrometry, Gelatin/*metabolism, Metabolomics, Solvents/chemistry/metabolism
Metabolism32812241Growth-associated catabolic potential of Acetoanaerobium sticklandii DSM 519 on gelatin and amino acids.Sangavai C, Chellapandi PJ Basic Microbiol10.1002/jobm.2020002922020Amino Acids/chemistry/*metabolism, Ammonia/metabolism, Biofuels, Clostridiales/*growth & development/*metabolism, Feedback, Physiological, Fermentation, Gelatin/*metabolism, Hydrolysis, Kinetics, Substrate SpecificityEnzymology
Genetics34780936Comparative genomic analysis of hyper-ammonia producing Acetoanaerobium sticklandii DSM 519 with purinolytic Gottschalkia acidurici 9a and pathogenic Peptoclostridium difficile 630.Sangavai C, Chellapandi PGenomics10.1016/j.ygeno.2021.11.0102021*Ammonia/metabolism, *Clostridiales/metabolism, Clostridium, Firmicutes, Genome, Bacterial, Genomics, PhylogenyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
263Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 519)https://www.dsmz.de/collection/catalogue/details/culture/DSM-519
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
25060M. Y. B. Galperin, V.,Tolstoy, I.,Yutin, N.10.1099/ijsem.0.001548Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. novIJSEM 66: 5506-5513 201627902180
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72245Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35630.1StrainInfo: A central database for resolving microbial strain identifiers