Strain identifier
BacDive ID: 2700
Type strain: 
Species: Clostridium sp.
Strain Designation: EDB2
Strain history: <- B. Bhushan, Biotechnol. Res. Inst., Natl. Res. Council of Canada, Montreal; EDB2 <- B. Bhushan {2002}
NCBI tax ID(s): 1506 (species)
General
@ref: 7077
BacDive-ID: 2700
DSM-Number: 17592
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium sp. EDB2 is an anaerobe, mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 7077
- history: <- B. Bhushan, Biotechnol. Res. Inst., Natl. Res. Council of Canada, Montreal; EDB2 <- B. Bhushan {2002}
doi: 10.13145/bacdive2700.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Anaerobacter 20215 Inflabilis 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium
@ref: 7077
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
strain designation: EDB2
type strain: no
Culture and growth conditions
culture medium
- @ref: 7077
- name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104c
- composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 7077
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 7077
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 7077
- sample type: marine sediment
- geographic location: Nova Scotia, near Halifax Harbor
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 7077
- description: Clostridium sp. EDB2 16S ribosomal RNA gene, partial sequence
- accession: AY510270
- length: 1276
- database: nuccore
- NCBI tax ID: 261021
External links
@ref: 7077
culture collection no.: DSM 17592
straininfo link
- @ref: 72228
- straininfo: 297643
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7077 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17592) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17592 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 72228 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297643.1 | StrainInfo: A central database for resolving microbial strain identifiers |