Strain identifier
BacDive ID: 269
Type strain:
Species: Aeromonas dhakensis
Strain Designation: P21
Strain history: CIP <- 2002, CCUG <- 2001, C.Vereecke & D. Janssens, LMG, Ghent, Belgium <- G. Huys, Ghent, Belgium <- I. Kühn, Stockhlom, Sweden
NCBI tax ID(s): 196024 (species)
General
@ref: 7130
BacDive-ID: 269
DSM-Number: 17689
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Aeromonas dhakensis P21 is an aerobe, mesophilic, motile bacterium that was isolated from faeces of child with diarrhoea.
NCBI tax id
- NCBI tax id: 196024
- Matching level: species
strain history
@ref | history |
---|---|
7130 | <- CCUG; CCUG 45377 <- LMG; LMG 19562 <- G. Huys; <- I. Kühn; P21 |
120005 | CIP <- 2002, CCUG <- 2001, C.Vereecke & D. Janssens, LMG, Ghent, Belgium <- G. Huys, Ghent, Belgium <- I. Kühn, Stockhlom, Sweden |
doi: 10.13145/bacdive269.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas dhakensis
- full scientific name: Aeromonas dhakensis (Huys et al. 2002) Beaz-Hidalgo et al. 2015
synonyms
@ref synonym 20215 Aeromonas dhakensis 20215 Aeromonas aquariorum 20215 Aeromonas hydrophila subsp. dhakensis
@ref: 7130
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas dhakensis
full scientific name: Aeromonas dhakensis (Huys et al. 2002) Beaz-Hidalgo et al. 2015
strain designation: P21
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 98.773 | ||
69480 | 99.989 | negative | ||
120005 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7130 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
7130 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf | |
33807 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
120005 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7130 | positive | growth | 30 | mesophilic |
33807 | positive | growth | 30 | mesophilic |
56751 | positive | growth | 28-37 | mesophilic |
120005 | positive | growth | 30-41 | |
120005 | no | growth | 5 | psychrophilic |
120005 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
56751 | aerobe |
120005 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.757 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | - | fermentation | 30849 |
68368 | amygdalin | + | fermentation | 27613 |
68368 | melibiose | - | fermentation | 28053 |
68368 | sucrose | + | fermentation | 17992 |
68368 | L-rhamnose | - | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | + | hydrolysis | 5291 |
68368 | tryptophan | + | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | - | assimilation | 16947 |
68368 | ornithine | - | degradation | 18257 |
68368 | lysine | - | degradation | 25094 |
68368 | arginine | + | hydrolysis | 29016 |
120005 | mannitol | + | fermentation | 29864 |
120005 | citrate | + | carbon source | 16947 |
120005 | glucose | + | fermentation | 17234 |
120005 | lactose | - | fermentation | 17716 |
120005 | nitrate | + | reduction | 17632 |
120005 | nitrite | + | reduction | 16301 |
120005 | malonate | - | assimilation | 15792 |
120005 | sodium thiosulfate | - | builds gas from | 132112 |
120005 | glucose | + | degradation | 17234 |
antibiotic resistance
- @ref: 120005
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
120005 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | + | ||
120005 | 15688 | acetoin | + | ||
120005 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
120005 | oxidase | + | |
120005 | beta-galactosidase | + | 3.2.1.23 |
120005 | alcohol dehydrogenase | + | 1.1.1.1 |
120005 | gelatinase | + | |
120005 | amylase | + | |
120005 | DNase | + | |
120005 | caseinase | + | 3.4.21.50 |
120005 | catalase | + | 1.11.1.6 |
120005 | tween esterase | + | |
120005 | lecithinase | + | |
120005 | lipase | + | |
120005 | lysine decarboxylase | + | 4.1.1.18 |
120005 | ornithine decarboxylase | - | 4.1.1.17 |
120005 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
120005 | protease | + | |
120005 | tryptophan deaminase | - | |
120005 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120005 | - | + | + | + | + | + | + | - | + | - | + | + | - | + | - | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7130 | + | + | - | - | - | - | - | - | + | + | + | + | + | - | - | - | + | - | + | - | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120005 | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | - | + | + | - | + | + | + | - | + | - | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120005 | + | + | + | + | + | - | - | + | - | + | + | - | - | + | - | - | - | + | + | + | - | - | + | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | + | - | - | + | + | - | + | - | - | - | + | - | - | + | + | + | + | + | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
7130 | faeces of child with diarrhoea | Dhaka | Bangladesh | BGD | Asia | 23.7104 | 90.4074 |
56751 | Human feces,child with diarrhea | Bangladesh | BGD | Asia | |||
120005 | Human, Feces | Bangladesh | BGD | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human | #Child |
taxonmaps
- @ref: 69479
- File name: preview.99_19.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_19&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: AM262157
- Sequence Identity:
- Total samples: 1087
- soil counts: 45
- aquatic counts: 400
- animal counts: 595
- plant counts: 47
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7130 | 2 | Risk group (German classification) |
120005 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas hydrophila subsp. dhakensis partial 16S rRNA gene, type strain CIP 107500T | AM262157 | 1350 | ena | 196024 |
7130 | Aeromonas hydrophila subsp. dhakensis 16S rRNA gene, type strain LMG 19562T | AJ508765 | 1498 | ena | 196024 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas dhakensis CIP 107500 | GCA_000820305 | scaffold | ncbi | 196024 |
66792 | Aeromonas dhakensis strain CIP 107500 | 196024.6 | wgs | patric | 196024 |
66792 | Aeromonas dhakensis CIP 107500 | 2648501391 | draft | img | 196024 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.636 | no |
flagellated | yes | 92.636 | no |
gram-positive | no | 98.895 | no |
anaerobic | no | 97.162 | yes |
aerobic | yes | 83.622 | yes |
halophile | no | 90.604 | no |
spore-forming | no | 96.18 | no |
glucose-util | yes | 89.657 | no |
thermophile | no | 99.232 | yes |
glucose-ferment | yes | 87.883 | no |
External links
@ref: 7130
culture collection no.: DSM 17689, CCM 7146, CCUG 45377, CIP 107500, LMG 19562
straininfo link
- @ref: 69951
- straininfo: 13448
literature
- topic: Phylogeny
- Pubmed-ID: 24055254
- title: AQU-1, a chromosomal class C beta-lactamase, among clinical Aeromonas dhakensis isolates: distribution and clinical significance.
- authors: Wu CJ, Wang HC, Chen PL, Chang MC, Sunny Sun H, Chou PH, Ko WC
- journal: Int J Antimicrob Agents
- DOI: 10.1016/j.ijantimicag.2013.08.002
- year: 2013
- mesh: Aeromonas/*drug effects/*enzymology/genetics/isolation & purification, Cephalosporinase/genetics/*metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Open Reading Frames, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA, Sequence Homology
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7130 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17689) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17689 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33807 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4942 | ||||
56751 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 45377) | https://www.ccug.se/strain?id=45377 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69951 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13448.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120005 | Curators of the CIP | Collection of Institut Pasteur (CIP 107500) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107500 |