Strain identifier
BacDive ID: 2667
Type strain: 
Species: Clostridium sp.
Strain Designation: KN-18
Strain history: <- IFO <- Y. Takeda, Sanraku Shuzo Co. Ltd., Japan; KN-18 (Clostridium kainantoi) {1943}
NCBI tax ID(s): 1506 (species)
version 8.1 (current version)
General
@ref: 122
BacDive-ID: 2667
DSM-Number: 523
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium sp. KN-18 is an anaerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 122
- history: <- IFO <- Y. Takeda, Sanraku Shuzo Co. Ltd., Japan; KN-18 (Clostridium kainantoi) {1943}
doi: 10.13145/bacdive2667.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium 20215 Anaerobacter 20215 Inflabilis
@ref: 122
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
strain designation: KN-18
type strain: no
Culture and growth conditions
culture medium
- @ref: 122
- name: CLOSTRIDIUM SP. MEDIUM (DSMZ Medium 54b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/54b
- composition: Name: CLOSTRIDIUM SP. MEDIUM (DSMZ Medium 54b) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water
culture temp
- @ref: 122
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 122
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 122
- sample type: soil
- geographic location: Hainan Island
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_535.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_149;97_160;98_434;99_535&stattab=map
- Last taxonomy: Clostridium butyricum subclade
- 16S sequence: AJ458421
- Sequence Identity:
- Total samples: 143517
- soil counts: 17569
- aquatic counts: 19472
- animal counts: 103476
- plant counts: 3000
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium butyricum partial 16S rRNA gene, strain DSM 523 | AJ458421 | 1407 | ena | 1492 |
| 20218 | Clostridium butyricum 16S rRNA gene, strain DSM 523 | X77834 | 1422 | ena | 1492 |
External links
@ref: 122
culture collection no.: DSM 523, IFO 3353, NBRC 3353
straininfo link
- @ref: 72196
- straininfo: 47204
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 122 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 523) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-523 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72196 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47204.1 | StrainInfo: A central database for resolving microbial strain identifiers |