Strain identifier

BacDive ID: 2662

Type strain: Yes

Species: Clostridium sardiniense

Strain history: <- ATCC <- VPI, 2971 <- A.R. Prévot

NCBI tax ID(s): 29369 (species)

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General

@ref: 1178

BacDive-ID: 2662

DSM-Number: 2632

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive

description: Clostridium sardiniense DSM 2632 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 29369
  • Matching level: species

strain history

  • @ref: 1178
  • history: <- ATCC <- VPI, 2971 <- A.R. Prévot

doi: 10.13145/bacdive2662.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sardiniense
  • full scientific name: Clostridium sardiniense corrig. Prévot 1938 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Clostridium absonum
    20215Clostridium sardiniensis

@ref: 1178

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sardiniense

full scientific name: Clostridium sardiniense Prévot 1938 emend. Wang et al. 2005

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 1178
  • name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/78
  • composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

  • @ref: 1178
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1178anaerobe
69480anaerobe99.735

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_3386.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1766;97_2114;98_2594;99_3386&stattab=map
  • Last taxonomy: Clostridium baratii
  • 16S sequence: AB161368
  • Sequence Identity:
  • Total samples: 11853
  • soil counts: 585
  • aquatic counts: 927
  • animal counts: 10123
  • plant counts: 218

Safety information

risk assessment

  • @ref: 1178
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium sardiniense gene for 16S rRNA, strain:DSM 2632, sub_clone:c2AB1613681519ena29369
20218Clostridium sardiniense 16S rRNA gene, strain DSM 2632X734461510ena29369
1178Clostridium sardiniense gene for 16S rRNA, strain:DSM 2632, sub_clone:c1AB1613671519ena29369

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium sardiniense DSM 2632GCA_016907995contigncbi29369
66792Clostridium sardiniense strain DSM 263229369.9wgspatric29369
66792Clostridium sardiniense DSM 26322901040167draftimg29369

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes86.744no
anaerobicyes96.911yes
halophileno87.655no
spore-formingyes92.26no
glucose-utilyes89.676no
motileyes73.437no
aerobicno96.151yes
thermophileno96.269yes
flagellatedno57.376no
glucose-fermentyes61.967no

External links

@ref: 1178

culture collection no.: DSM 2632, ATCC 33455, VPI 2971

straininfo link

  • @ref: 72191
  • straininfo: 40504

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1178Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2632)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2632
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72191Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40504.1StrainInfo: A central database for resolving microbial strain identifiers