Strain identifier
BacDive ID: 2656
Type strain: 
Species: Clostridium felsineum
Strain Designation: 653
Strain history: <- ATCC; ATCC 17797 (Clostridium roseum) <- L. S. McClung; 653 <- F. W. Andrewes {1930}
NCBI tax ID(s): 36839 (species)
version 9.3 (current version)
General
@ref: 2996
BacDive-ID: 2656
DSM-Number: 7320
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium felsineum 653 is an anaerobe, mesophilic bacterium that was isolated from german maize.
NCBI tax id
- NCBI tax id: 36839
- Matching level: species
strain history
- @ref: 2996
- history: <- ATCC; ATCC 17797 (Clostridium roseum) <- L. S. McClung; 653 <- F. W. Andrewes {1930}
doi: 10.13145/bacdive2656.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium felsineum
- full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939 (Approved Lists 1980)
synonyms
@ref synonym 20215 Clostridium aurantibutyricum 20215 Clostridium roseum 20215 Bacillus felsineus
@ref: 2996
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium felsineum
full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939
strain designation: 653
type strain: no
Culture and growth conditions
culture medium
- @ref: 2996
- name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104c
- composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 2996
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2996 | anaerobe | |
| 125439 | facultative anaerobe | 99.1 |
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 92.1
Isolation, sampling and environmental information
isolation
- @ref: 2996
- sample type: german maize
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 2996
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2996
- description: Clostridium roseum 16S rRNA gene, partial, strain DSM 7320
- accession: Y18170
- length: 1420
- database: nuccore
- NCBI tax ID: 84029
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium felsineum DSM 7320 | GCA_002006215 | complete | ncbi | 36839 |
| 66792 | Clostridium roseum strain DSM 7320 | 84029.9 | wgs | patric | 84029 |
| 66792 | Clostridium roseum DSM 7320 | 2687453704 | draft | img | 84029 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 65.378 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 87.299 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.55 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 78.326 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.563 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 80.239 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 86.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 79.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 99.1 |
External links
@ref: 2996
culture collection no.: DSM 7320, ATCC 17797
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2996 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7320) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7320 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |