Strain identifier
BacDive ID: 2655
Type strain: 
Species: Clostridium felsineum
Strain Designation: Wis 42-A
Strain history: <- NRRL; NRRL B-575 (Clostridium roseum) <- J. Naghski, Eastern Regional Research Laboratory, Agricultural Research Service, U.S. Department of Agriculture, Philadelphia, Pennsylvania, USA; Wis 42-A <- E. McCoy, University of Wisconsin, Department of Bacteriology, Madison, Wisconsin, USA
NCBI tax ID(s): 36839 (species)
version 9.3 (current version)
General
@ref: 2662
BacDive-ID: 2655
DSM-Number: 6424
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium felsineum Wis 42-A is an anaerobe, mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 36839
- Matching level: species
strain history
- @ref: 2662
- history: <- NRRL; NRRL B-575 (Clostridium roseum) <- J. Naghski, Eastern Regional Research Laboratory, Agricultural Research Service, U.S. Department of Agriculture, Philadelphia, Pennsylvania, USA; Wis 42-A <- E. McCoy, University of Wisconsin, Department of Bacteriology, Madison, Wisconsin, USA
doi: 10.13145/bacdive2655.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium felsineum
- full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939 (Approved Lists 1980)
synonyms
@ref synonym 20215 Clostridium aurantibutyricum 20215 Clostridium roseum 20215 Bacillus felsineus
@ref: 2662
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium felsineum
full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939
strain designation: Wis 42-A
type strain: no
Culture and growth conditions
culture medium
- @ref: 2662
- name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411)
- growth: yes
- link: https://mediadive.dsmz.de/medium/411
- composition: Name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411) Composition: Potato 200.0 g/l D-Glucose 6.0 g/l CaCO3 2.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 2662
- growth: positive
- type: growth
- temperature: 35
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2662 | anaerobe | |
| 125439 | facultative anaerobe | 99.3 |
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 92
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_887.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_199;97_216;98_245;99_887&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: Y18172
- Sequence Identity:
- Total samples: 3984
- soil counts: 1313
- aquatic counts: 1145
- animal counts: 1392
- plant counts: 134
Safety information
risk assessment
- @ref: 2662
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Clostridium roseum 16S rRNA gene, partial, strain DSM 6424
- accession: Y18172
- length: 1460
- database: nuccore
- NCBI tax ID: 84029
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium felsineum DSM 6424 | GCA_002006175 | complete | ncbi | 36839 |
| 66792 | Clostridium roseum strain DSM 6424 | 84029.8 | wgs | patric | 84029 |
| 66792 | Clostridium roseum Wis 42-A | 2703719318 | draft | img | 84029 |
GC content
- @ref: 2662
- GC-content: 29.8
- method: sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 64.704 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 87.799 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.55 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 79.324 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.382 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 78.739 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 86.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 79.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 99.3 |
External links
@ref: 2662
culture collection no.: DSM 6424, NRRL B-575
straininfo link
- @ref: 72185
- straininfo: 48192
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2662 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6424) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6424 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72185 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48192.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |