Strain identifier

BacDive ID: 2650

Type strain: Yes

Species: Gottschalkia purinilytica

Strain history: <- P. Dürre, Universität Göttingen, Germany; WA1 <- W. Andersch {1977}

NCBI tax ID(s): 1503 (species)

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General

@ref: 759

BacDive-ID: 2650

DSM-Number: 1384

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, chemoorganotroph, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Gottschalkia purinilytica DSM 1384 is an anaerobe, chemoorganotroph, spore-forming bacterium that was isolated from chicken manure contaminated soil.

NCBI tax id

  • NCBI tax id: 1503
  • Matching level: species

strain history

  • @ref: 759
  • history: <- P. Dürre, Universität Göttingen, Germany; WA1 <- W. Andersch {1977}

doi: 10.13145/bacdive2650.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Tissierellales
  • family: Gottschalkiaceae
  • genus: Gottschalkia
  • species: Gottschalkia purinilytica
  • full scientific name: Gottschalkia purinilytica (Dürre et al. 1981) Poehlein et al. 2017

  • synonyms

    @refsynonym
    20215Gottschalkia purinilytica
    20215Clostridium purinolyticum
    20215Clostridium purinilyticum

@ref: 759

domain: Bacteria

phylum: Firmicutes

class: Tissierellia

order: Clostridiales

family: Gottschalkiaceae

genus: Gottschalkia

species: Gottschalkia purinilytica

full scientific name: Gottschalkia purinilytica (Dürre et al. 1981) Poehlein et al. 2017

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
43456positive2.7-9.6 µm1.1-1.6 µmrod-shapedyespolar
69480yes92.821
69480positive100

Culture and growth conditions

culture medium

  • @ref: 759
  • name: GOTTSCHALKIA MEDIUM (DSMZ Medium 76)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/76
  • composition: Name: GOTTSCHALKIA MEDIUM (DSMZ Medium 76) Composition: Uric acid 2.0 g/l Na2CO3 1.5 g/l Yeast extract 1.0 g/l K2HPO4 0.91 g/l KOH 0.67 g/l Na-thioglycolate 0.5 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.015 g/l FeSO4 x 7 H2O 0.006 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l NaOH 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
759positivegrowth35mesophilic
43456positiveoptimum36mesophilic

culture pH

  • @ref: 43456
  • ability: positive
  • type: optimum
  • pH: 7.3-7.8

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
759anaerobe
43456obligate anaerobe
69480anaerobe99.674

nutrition type

  • @ref: 43456
  • type: chemoorganotroph

spore formation

@refspore descriptiontype of sporespore formationconfidence
43456spherical terminally located that result in swollen cellsendosporeyes
69481yes97
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4345617057cellobiose-assimilation
4345615824D-fructose-assimilation
4345612936D-galactose-assimilation
4345617634D-glucose-assimilation
4345616899D-mannitol-assimilation
4345616024D-mannose-assimilation
4345616988D-ribose-assimilation
4345617924D-sorbitol-assimilation
4345665327D-xylose-assimilation
4345630849L-arabinose-assimilation
4345617716lactose-assimilation
4345617306maltose-assimilation
4345617992sucrose-assimilation
434565291gelatin-hydrolysis
4345628017starch-hydrolysis
4345617632nitrate-reduction
4345616189sulfate-reduction
4345617359sulfite-reduction
4345616094thiosulfate-reduction
4345616708adenine+assimilation
4345616335adenosine+assimilation
4345616235guanine+assimilation
4345617368hypoxanthine+assimilation
4345627226uric acid+assimilation
4345615318xanthine+assimilation

metabolite production

@refChebi-IDmetaboliteproduction
4345617968butyrateno
4345618276dihydrogenno
4345616136hydrogen sulfideno
4345630089acetateyes
4345616134ammoniayes
4345616526carbon dioxideyes
4345615740formateyes

enzymes

@refvalueactivityec
43456catalase-1.11.1.6
43456lecithinase-
43456lipase-
43456urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
759chicken manure contaminated soilnear GöttingenGermanyDEUEurope
43456farm soil containing chicken manureBovenden-EddigehausenGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Agriculture#Livestock (Husbandry)
#Environmental#Terrestrial#Soil
#Host#Birds#Chicken
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 759
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium purinilyticum strain ATCC 33906 16S ribosomal RNA gene, partial sequenceM604911510ena1503
759Clostridium purinilyticum partial 16S rRNA gene, type strain DSM 1384TFR7498941517ena1503

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gottschalkia purinilytica DSM 1384GCA_001190785contigncbi1503
66792Gottschalkia purinilytica strain DSM 13841503.6wgspatric1503
66792Gottschalkia purinilytica DSM 13842645727973draftimg1503

GC content

@refGC-contentmethod
75929.0
4345628.8
75928.8sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes97no
motileyes82.282no
gram-positiveyes79.551no
anaerobicyes98.791yes
aerobicno97.686yes
halophileno87.2no
spore-formingyes95.028yes
thermophileno95.064yes
glucose-utilyes64.802yes
flagellatedyes60.602yes
glucose-fermentyes55.528no

External links

@ref: 759

culture collection no.: DSM 1384, ATCC 33906, WA 1

straininfo link

  • @ref: 72181
  • straininfo: 40756

literature

  • topic: Genetics
  • Pubmed-ID: 26404607
  • title: Draft Genome Sequence of Purine-Degrading Gottschalkia purinilyticum (Formerly Clostridium purinilyticum) WA1 (DSM 1384).
  • authors: Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre P
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.01088-15
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
759Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1384)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1384
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
43456Anja Poehlein, Natalya Yutin, Rolf Daniel, Michael Y. Galperin10.1099/ijsem.0.002008Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.IJSEM 67: 2711-2719 201728853681
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72181Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40756.1StrainInfo: A central database for resolving microbial strain identifiers