Strain identifier
BacDive ID: 2645
Type strain:
Species: Clostridium polysaccharolyticum
Strain Designation: B
Strain history: <- ATCC <- N. O. van Gylswyk, National Chemical Research Laboratory, Council for Scientific and Industrial Research, Pretoria, South Africa; B (Fusobacterium polysaccharolyticum)
NCBI tax ID(s): 1121329 (strain), 29364 (species)
General
@ref: 660
BacDive-ID: 2645
DSM-Number: 1801
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridium polysaccharolyticum B is an anaerobe, spore-forming, mesophilic bacterium that was isolated from sheep rumen.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1121329 | strain |
29364 | species |
strain history
- @ref: 660
- history: <- ATCC <- N. O. van Gylswyk, National Chemical Research Laboratory, Council for Scientific and Industrial Research, Pretoria, South Africa; B (Fusobacterium polysaccharolyticum)
doi: 10.13145/bacdive2645.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium polysaccharolyticum
- full scientific name: Clostridium polysaccharolyticum (van Gylswyk 1981) van Gylswyk et al. 1983
synonyms
- @ref: 20215
- synonym: Fusobacterium polysaccharolyticum
@ref: 660
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium polysaccharolyticum
full scientific name: Clostridium polysaccharolyticum (van Gylswyk 1981) van Gylswyk et al. 1983
strain designation: B
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 660
- name: RUMINICLOSTRIDIUM MEDIUM (DSMZ Medium 140)
- growth: yes
- link: https://mediadive.dsmz.de/medium/140
- composition: Name: RUMINICLOSTRIDIUM MEDIUM (DSMZ Medium 140) Composition: Cellobiose 5.0 g/l Na2CO3 2.5 g/l Yeast extract 1.2 g/l NaCl 1.0 g/l K2HPO4 0.5 g/l (NH4)2SO4 0.5 g/l KH2PO4 0.5 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l CaCl2 x 2 H2O 0.1 g/l MgSO4 x 7 H2O 0.1 g/l Sodium resazurin 0.0005 g/l Sludge Rumen fluid Distilled water
culture temp
- @ref: 660
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
660 | anaerobe | |
69480 | anaerobe | 99.434 |
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 92
Isolation, sampling and environmental information
isolation
- @ref: 660
- sample type: sheep rumen
- geographic location: Pretoria
- country: South Africa
- origin.country: ZAF
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Caprinae (Sheep/Goat) |
#Host Body-Site | #Organ | #Rumen |
Safety information
risk assessment
- @ref: 660
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | C.polysaccharolyticum gene for 16S ribosomal RNA | X71858 | 1523 | ena | 29364 |
660 | Clostridium polysaccharolyticum 16S rRNA gene, strain DSM 1801 | X77839 | 1509 | ena | 29364 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | [Clostridium] polysaccharolyticum DSM 1801 | GCA_900111595 | scaffold | ncbi | 29364 |
66792 | [Clostridium] polysaccharolyticum strain DSM 1801 | 29364.8 | wgs | patric | 29364 |
66792 | Lachnoclostridium polysaccharolyticum DSM 1801 | 2606217760 | draft | img | 29364 |
GC content
- @ref: 660
- GC-content: 41.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 92 | no |
motile | yes | 75.681 | no |
flagellated | no | 54.855 | no |
gram-positive | yes | 80.022 | no |
anaerobic | yes | 99.186 | yes |
aerobic | no | 97.106 | no |
halophile | no | 91.931 | no |
spore-forming | yes | 85.522 | no |
glucose-ferment | yes | 70.828 | no |
thermophile | no | 72.485 | no |
glucose-util | yes | 87.73 | no |
External links
@ref: 660
culture collection no.: DSM 1801, ATCC 33142
straininfo link
- @ref: 72176
- straininfo: 40354
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
660 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1801) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1801 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
72176 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40354.1 | StrainInfo: A central database for resolving microbial strain identifiers |