Strain identifier

BacDive ID: 2644

Type strain: No

Species: Clostridium perfringens

Strain history: <- U.S. Justesen, Odense University Hospital, Dept. of Clinical Microbiol., Denmark; VPI No.5 <- T. Justesen, Hillerød Hospital, Denmark

NCBI tax ID(s): 1502 (species)

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General

@ref: 18054

BacDive-ID: 2644

DSM-Number: 25589

keywords: Bacteria, anaerobe, mesophilic, human pathogen

description: Clostridium perfringens DSM 25589 is an anaerobe, mesophilic human pathogen that was isolated from anaerobe lab.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

strain history

  • @ref: 18054
  • history: <- U.S. Justesen, Odense University Hospital, Dept. of Clinical Microbiol., Denmark; VPI No.5 <- T. Justesen, Hillerød Hospital, Denmark

doi: 10.13145/bacdive2644.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 18054

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
18054FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203a.pdf
18054COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 18054
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 18054
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
18054-+++-+--+++---+-+/------+------
18054-+++-+/---+++---+-+-----+------

Isolation, sampling and environmental information

isolation

  • @ref: 18054
  • sample type: anaerobe lab
  • geographic location: Virginia Polytechnic Inst., Blacksburg
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2
#Engineered#Laboratory
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 18054
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 18054

culture collection no.: DSM 25589, VPI No.5

straininfo link

  • @ref: 72175
  • straininfo: 402279

Reference

@idauthorscataloguedoi/urltitle
18054Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25589)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25589
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68380Automatically annotated from API rID32A
72175Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402279.1StrainInfo: A central database for resolving microbial strain identifiers