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Strain identifier

BacDive ID: 2644

Type strain: No

Species: Clostridium perfringens

Strain history: <- U.S. Justesen, Odense University Hospital, Dept. of Clinical Microbiol., Denmark; VPI No.5 <- T. Justesen, Hillerød Hospital, Denmark

NCBI tax ID(s): 1502 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18054

BacDive-ID: 2644

DSM-Number: 25589

keywords: Bacteria, anaerobe, mesophilic, human pathogen

description: Clostridium perfringens DSM 25589 is an anaerobe, mesophilic human pathogen that was isolated from anaerobe lab.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

strain history: <- U.S. Justesen, Odense University Hospital, Dept. of Clinical Microbiol., Denmark; VPI No.5 <- T. Justesen, Hillerød Hospital, Denmark

doi: 10.13145/bacdive2644.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 18054

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
18054FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203a.pdf
18054COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 18054
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 18054
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan-energy source
6838017632nitrate+reduction
6838029985L-glutamate-degradation
6838016634raffinose-fermentation
6838016024D-mannose+fermentation
6838029016arginine+hydrolysis
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
18054-+++-+--+++---+-+/------+------
18054-+++-+/---+++---+-+-----+------

Isolation, sampling and environmental information

isolation

  • @ref: 18054
  • sample type: anaerobe lab
  • geographic location: Virginia Polytechnic Inst., Blacksburg
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2
#Engineered#Laboratory
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 18054
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 18054

culture collection no.: DSM 25589, VPI No.5

Reference

@idauthorscataloguedoi/urltitle
18054Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25589)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25589
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68380Automatically annotated from API rID32A