Strain identifier
BacDive ID: 2643
Type strain:
Species: Clostridium perfringens
Strain Designation: ES-MS 22
Strain history: <- European Space Agency, Noordwijk, Netherlands; ES-MS 22 <- C. Moissl-Eichinger, Univ. Regensburg, Germany
NCBI tax ID(s): 1502 (species)
General
@ref: 17129
BacDive-ID: 2643
DSM-Number: 30770
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, human pathogen
description: Clostridium perfringens ES-MS 22 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from spacecraft-associated clean room class ISO 8, Herschel Space Observatory.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
strain history
- @ref: 17129
- history: <- European Space Agency, Noordwijk, Netherlands; ES-MS 22 <- C. Moissl-Eichinger, Univ. Regensburg, Germany
doi: 10.13145/bacdive2643.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 17129
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937
strain designation: ES-MS 22
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 17129
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_30770.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17129
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
- @ref: 17129
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
17129 | anaerobe | |
69480 | anaerobe | 98.549 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 99.628 |
Isolation, sampling and environmental information
isolation
- @ref: 17129
- sample type: spacecraft-associated clean room class ISO 8, Herschel Space Observatory
- geographic location: Noordwijk, European Space Research and Technology Centre
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
taxonmaps
- @ref: 69479
- File name: preview.99_335.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_235;97_257;98_286;99_335&stattab=map
- Last taxonomy: Clostridium perfringens subclade
- 16S sequence: EU888515
- Sequence Identity:
- Total samples: 88326
- soil counts: 3063
- aquatic counts: 8762
- animal counts: 75654
- plant counts: 847
Safety information
risk assessment
- @ref: 17129
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17129
- description: Clostridium perfringens strain ES_MS22c 16S ribosomal RNA gene, partial sequence
- accession: EU888515
- length: 1275
- database: ena
- NCBI tax ID: 1502
Genome sequences
- @ref: 66792
- description: Clostridium perfringens strain FDAARGOS_932
- accession: 1502.1790
- assembly level: complete
- database: patric
- NCBI tax ID: 1502
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 81.919 | no |
gram-positive | yes | 92.916 | no |
anaerobic | yes | 97.389 | yes |
aerobic | no | 96.341 | no |
halophile | no | 69.654 | no |
spore-forming | yes | 90.361 | no |
glucose-util | yes | 90.4 | no |
flagellated | no | 91.663 | no |
thermophile | no | 97.552 | yes |
glucose-ferment | yes | 77.203 | no |
External links
@ref: 17129
culture collection no.: DSM 30770
straininfo link
- @ref: 72174
- straininfo: 401966
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
17129 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30770) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30770 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
72174 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401966.1 | StrainInfo: A central database for resolving microbial strain identifiers |