Strain identifier
BacDive ID: 2636
Type strain:
Species: Clostridium perfringens
Strain Designation: C12
Strain history: <- F.K. Lücke BAFF, C12 <- J. Baumgart
NCBI tax ID(s): 1502 (species)
General
@ref: 4485
BacDive-ID: 2636
DSM-Number: 11780
keywords: genome sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Clostridium perfringens C12 is an anaerobe, mesophilic human pathogen that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
strain history
- @ref: 4485
- history: <- F.K. Lücke BAFF, C12 <- J. Baumgart
doi: 10.13145/bacdive2636.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 4485
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937
strain designation: C12
type strain: no
Culture and growth conditions
culture medium
- @ref: 4485
- name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
- growth: yes
- link: https://mediadive.dsmz.de/medium/78
- composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
culture temp
- @ref: 4485
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4485
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4485
- sample type: human faeces
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 4485
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Clostridium perfringens C12
- accession: GCA_016236135
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1502
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 90.064 | no |
gram-positive | yes | 92.599 | no |
anaerobic | yes | 98.125 | yes |
aerobic | no | 96.743 | yes |
halophile | no | 74.002 | no |
spore-forming | yes | 92.399 | no |
glucose-util | yes | 90.389 | no |
thermophile | no | 99.482 | yes |
motile | no | 77.262 | no |
glucose-ferment | yes | 77.108 | no |
External links
@ref: 4485
culture collection no.: DSM 11780
straininfo link
- @ref: 72167
- straininfo: 49175
literature
- topic: Pathogenicity
- Pubmed-ID: 22878397
- title: Sensitivity of pathogenic and commensal bacteria from the human colon to essential oils.
- authors: Thapa D, Losa R, Zweifel B, Wallace RJ
- journal: Microbiology (Reading)
- DOI: 10.1099/mic.0.061127-0
- year: 2012
- mesh: Anti-Bacterial Agents/*pharmacology, Colon/*microbiology, Gram-Negative Bacteria/*drug effects/growth & development, Gram-Positive Bacteria/*drug effects/growth & development, Humans, Microbial Sensitivity Tests, Oils, Volatile/*pharmacology, Plant Oils/*pharmacology
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4485 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11780) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11780 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
72167 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49175.1 | StrainInfo: A central database for resolving microbial strain identifiers |