Strain identifier

BacDive ID: 2636

Type strain: No

Species: Clostridium perfringens

Strain Designation: C12

Strain history: <- F.K. Lücke BAFF, C12 <- J. Baumgart

NCBI tax ID(s): 1502 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4485

BacDive-ID: 2636

DSM-Number: 11780

keywords: genome sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Clostridium perfringens C12 is an anaerobe, mesophilic human pathogen that was isolated from human faeces.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

strain history

  • @ref: 4485
  • history: <- F.K. Lücke BAFF, C12 <- J. Baumgart

doi: 10.13145/bacdive2636.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 4485

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

strain designation: C12

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4485
  • name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/78
  • composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

  • @ref: 4485
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4485
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4485
  • sample type: human faeces
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 4485
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Clostridium perfringens C12
  • accession: GCA_016236135
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1502

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno90.064no
gram-positiveyes92.599no
anaerobicyes98.125yes
aerobicno96.743yes
halophileno74.002no
spore-formingyes92.399no
glucose-utilyes90.389no
thermophileno99.482yes
motileno77.262no
glucose-fermentyes77.108no

External links

@ref: 4485

culture collection no.: DSM 11780

straininfo link

  • @ref: 72167
  • straininfo: 49175

literature

  • topic: Pathogenicity
  • Pubmed-ID: 22878397
  • title: Sensitivity of pathogenic and commensal bacteria from the human colon to essential oils.
  • authors: Thapa D, Losa R, Zweifel B, Wallace RJ
  • journal: Microbiology (Reading)
  • DOI: 10.1099/mic.0.061127-0
  • year: 2012
  • mesh: Anti-Bacterial Agents/*pharmacology, Colon/*microbiology, Gram-Negative Bacteria/*drug effects/growth & development, Gram-Positive Bacteria/*drug effects/growth & development, Humans, Microbial Sensitivity Tests, Oils, Volatile/*pharmacology, Plant Oils/*pharmacology

Reference

@idauthorscataloguedoi/urltitle
4485Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11780)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11780
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
72167Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49175.1StrainInfo: A central database for resolving microbial strain identifiers