Strain identifier
BacDive ID: 263
Type strain:
Species: Aeromonas tecta
Strain Designation: F518
Strain history: CIP <- 2014, DSMZ <- A. Demarta, Cantonal Inst. Microbiol., Bellinzona, Switzerland: strain F518
NCBI tax ID(s): 324617 (species)
General
@ref: 6882
BacDive-ID: 263
DSM-Number: 17300
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, human pathogen
description: Aeromonas tecta F518 is a mesophilic, motile human pathogen that was isolated from stool of a child with diarrhoea.
NCBI tax id
- NCBI tax id: 324617
- Matching level: species
strain history
@ref | history |
---|---|
6882 | <- A. Demarta, Cantonal Insititute of Microbiology, Bellinzona; F518 |
123437 | CIP <- 2014, DSMZ <- A. Demarta, Cantonal Inst. Microbiol., Bellinzona, Switzerland: strain F518 |
doi: 10.13145/bacdive263.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas tecta
- full scientific name: Aeromonas tecta Demarta et al. 2010
@ref: 6882
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas tecta
full scientific name: Aeromonas tecta Demarta et al. 2010
strain designation: F518
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 98.616 | ||
69480 | 99.992 | negative | ||
123437 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6882 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
6882 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
36286 | TCS-Biorad-Tubes | yes | ||
123437 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6882 | positive | growth | 30 | mesophilic |
36286 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.779 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | + | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | + | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6882 | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6882 | stool of a child with diarrhoea | Canton Ticino | Switzerland | CHE | Europe |
123437 | Human, Stool | Bellinzona, Switzerland | Switzerland | CHE | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human | #Child |
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
6882 | yes, in single cases | yes, in single cases | 1 | Risk group (German classification) |
123437 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas tecta strain CECT7082 16S ribosomal RNA gene, partial sequence | HQ832416 | 1503 | ena | 324617 |
20218 | Aeromonas tecta strain CECT 7082 16S ribosomal RNA gene, partial sequence | JX014445 | 151 | ena | 324617 |
6882 | Aeromonas tecta partial 16S rRNA gene, strain F518 | AJ458402 | 1354 | ena | 324617 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas tecta CECT 7082 | GCA_000820185 | scaffold | ncbi | 324617 |
66792 | Aeromonas tecta CECT 7082 | 324617.3 | wgs | patric | 324617 |
66792 | Aeromonas tecta CECT 7082 | 2645727543 | draft | img | 324617 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.539 | no |
motile | yes | 90.539 | no |
flagellated | yes | 89.821 | no |
flagellated | yes | 89.821 | no |
gram-positive | no | 98.876 | no |
gram-positive | no | 98.876 | no |
anaerobic | no | 97.798 | no |
anaerobic | no | 97.798 | no |
aerobic | yes | 90.168 | no |
aerobic | yes | 90.168 | no |
halophile | no | 90.834 | no |
halophile | no | 90.834 | no |
spore-forming | no | 96.32 | no |
spore-forming | no | 96.32 | no |
glucose-util | yes | 91.463 | yes |
glucose-util | yes | 91.463 | yes |
thermophile | no | 99.569 | yes |
thermophile | no | 99.569 | yes |
glucose-ferment | yes | 89.301 | yes |
glucose-ferment | yes | 89.301 | yes |
External links
@ref: 6882
culture collection no.: DSM 17300, CECT 7082, MDC 91, CIP 110807
straininfo link
- @ref: 69945
- straininfo: 302331
literature
- topic: Phylogeny
- Pubmed-ID: 18617346
- title: Aeromonas tecta sp. nov., isolated from clinical and environmental sources.
- authors: Demarta A, Kupfer M, Riegel P, Harf-Monteil C, Tonolla M, Peduzzi R, Monera A, Jose Saavedra M, Martinez-Murcia A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2008.04.005
- year: 2008
- mesh: Adult, Aeromonas/*classification/drug effects/genetics/*isolation & purification, Animals, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics, Child, DNA Gyrase/genetics, DNA-Directed RNA Polymerases/genetics, Environmental Microbiology, Feces/microbiology, Glycerol/metabolism, Humans, Microbial Sensitivity Tests, Oncorhynchus mykiss/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sigma Factor/genetics, Species Specificity
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6882 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17300) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17300 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
36286 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30620 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69945 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID302331.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123437 | Curators of the CIP | Collection of Institut Pasteur (CIP 110807) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110807 |