Strain identifier

BacDive ID: 2622

Type strain: Yes

Species: Ruminiclostridium papyrosolvens

Strain history: <- NCIB; NCIMB 11394 <- R. H. Madden, Aberdeen University, Aberdeen, United Kingdom

NCBI tax ID(s): 588581 (strain), 29362 (species)

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General

@ref: 1224

BacDive-ID: 2622

DSM-Number: 2782

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Ruminiclostridium papyrosolvens DSM 2782 is an anaerobe, mesophilic bacterium that was isolated from intertidal mud.

NCBI tax id

NCBI tax idMatching level
588581strain
29362species

strain history

  • @ref: 1224
  • history: <- NCIB; NCIMB 11394 <- R. H. Madden, Aberdeen University, Aberdeen, United Kingdom

doi: 10.13145/bacdive2622.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Ruminiclostridium
  • species: Ruminiclostridium papyrosolvens
  • full scientific name: Ruminiclostridium papyrosolvens (Madden et al. 1982) Zhang et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Clostridium papyrosolvens

@ref: 1224

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Oscillospiraceae

genus: Ruminiclostridium

species: Ruminiclostridium papyrosolvens

full scientific name: Ruminiclostridium papyrosolvens (Madden et al. 1982) Zhang et al. 2018

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1224
  • name: RUMINICLOSTRIDIUM PAPYROSOLVENS MEDIUM (DSMZ Medium 289)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/289
  • composition: Name: RUMINICLOSTRIDIUM PAPYROSOLVENS MEDIUM (DSMZ Medium 289) Composition: Cellulose 5.0 g/l (optional) Cellobiose 5.0 g/l K2HPO4 1.65 g/l NH4Cl 1.0 g/l NaCl 0.9 g/l (NH4)2SO4 0.9 g/l Yeast extract 0.6 g/l L-Cysteine HCl x H2O 0.5 g/l MgSO4 x 7 H2O 0.18 g/l CaCl2 x 2 H2O 0.12 g/l Sodium resazurin 0.0005 g/l Sea water Distilled water

culture temp

  • @ref: 1224
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1224
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1224
  • sample type: intertidal mud
  • geographic location: Scotland, Aberdeenshire, Don river
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Terrestrial#Tidal flat

Safety information

risk assessment

  • @ref: 1224
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1224
  • description: C.papyrosolvens gene for 16S ribosomal RNA
  • accession: X71852
  • length: 1514
  • database: ena
  • NCBI tax ID: 588581

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ruminiclostridium papyrosolvens DSM 2782GCA_000175795contigncbi588581
66792Clostridium papyrosolvens DSM 2782588581.3wgspatric588581
66792Ruminiclostridium papyrosolvens DSM 2782645058763completeimg588581
66792Ruminiclostridium papyrosolvens DSM 2782GCA_029318685completencbi588581

GC content

  • @ref: 1224
  • GC-content: 30.0

External links

@ref: 1224

culture collection no.: DSM 2782, ATCC 35413, NCIMB 11394

straininfo link

  • @ref: 72153
  • straininfo: 41062

literature

  • Pubmed-ID: 29467821
  • title: Function analysis of 5'-UTR of the cellulosomal xyl-doc cluster in Clostridium papyrosolvens.
  • authors: Zou X, Ren Z, Wang N, Cheng Y, Jiang Y, Wang Y, Xu C
  • journal: Biotechnol Biofuels
  • DOI: 10.1186/s13068-018-1040-0
  • year: 2018

Reference

@idauthorscataloguedoi/urltitle
1224Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2782)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2782
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
72153Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41062.1StrainInfo: A central database for resolving microbial strain identifiers