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Strain identifier

BacDive ID: 2618

Type strain: Yes

Species: Clostridioides mangenotii

Strain Designation: A33N

Strain history: ATCC 25761 <-- L. DS. Smith VPI 4622 <-- A. Prévot A33N.

NCBI tax ID(s): 1540 (species)

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General

@ref: 609

BacDive-ID: 2618

DSM-Number: 1289

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridioides mangenotii A33N is an anaerobe, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1540
  • Matching level: species

strain history

doi: 10.13145/bacdive2618.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptostreptococcaceae
  • genus: Clostridioides
  • species: Clostridioides mangenotii
  • full scientific name: Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

  • synonyms

    @refsynonym
    20215Clostridium mangenotii
    20215Inflabilis mangenoti

@ref: 609

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptostreptococcaceae

genus: Clostridioides

species: Clostridioides mangenotii

full scientific name: Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

strain designation: A33N

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 93.952

Culture and growth conditions

culture medium

  • @ref: 609
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
609positivegrowth26mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
609anaerobe
69480anaerobe98.477

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 80.726

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.117

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
609soilCôte d'IvoireCIVAfrica
67770African soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4722.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2342;97_2849;98_3542;99_4722&stattab=map
  • Last taxonomy: Clostridioides mangenotii subclade
  • 16S sequence: LC007110
  • Sequence Identity:
  • Total samples: 22650
  • soil counts: 5343
  • aquatic counts: 1722
  • animal counts: 14515
  • plant counts: 1070

Safety information

risk assessment

  • @ref: 609
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium mangenotii 16S ribosomal RNAM590981450ena1540
609Clostridium mangenotii partial 16S rRNA gene, type strain DSM1289TFR7336621493ena1540
67770[Clostridium] mangenotii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1428LC0071101465ena1540

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridioides mangenotii DSM 1289GCA_017873185contigncbi1540
66792Clostridioides mangenotii strain DSM 12891540.3wgspatric1540
66792Clostridium mangenotii DSM 12892913326743draftimg1540
66792Moraxella catarrhalis S07NGCA_022341325contigpatric480

External links

@ref: 609

culture collection no.: DSM 1289, ATCC 25761, JCM 1428, NCIMB 10639, VPI 4622, BCRC 14479

straininfo link

@refpassport
20218http://www.straininfo.net/strains/157238
20218http://www.straininfo.net/strains/104539
20218http://www.straininfo.net/strains/171854

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
609Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1289)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1289
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)