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Strain identifier

BacDive ID: 2612

Type strain: Yes

Species: Clostridium leptum

Strain history: <- W. E. C. Moore, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI T7-24-1

NCBI tax ID(s): 428125 (strain), 1535 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 425

BacDive-ID: 2612

DSM-Number: 753

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium leptum DSM 753 is an anaerobe, mesophilic bacterium that was isolated from human faeces.

NCBI tax id

NCBI tax idMatching level
1535species
428125strain

strain history: <- W. E. C. Moore, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI T7-24-1

doi: 10.13145/bacdive2612.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium leptum
  • full scientific name: Clostridium leptum Moore et al. 1976 (Approved Lists 1980)

@ref: 425

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium leptum

full scientific name: Clostridium leptum Moore et al. 1976

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.983

Culture and growth conditions

culture medium

  • @ref: 425
  • name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104c
  • composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c; with strain-specific modifications) Composition: D-Maltose 10.0 g/l Yeast extract 10.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 425
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
425anaerobe
69480anaerobe99.682

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 87.543

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 99.525

Isolation, sampling and environmental information

isolation

  • @ref: 425
  • sample type: human faeces

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_5381.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_229;96_2609;97_3194;98_4011;99_5381&stattab=map
  • Last taxonomy: [Clostridium] leptum subclade
  • 16S sequence: AJ305238
  • Sequence Identity:
  • Total samples: 73533
  • soil counts: 330
  • aquatic counts: 1257
  • animal counts: 71745
  • plant counts: 201

Safety information

risk assessment

  • @ref: 425
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium leptum 16S ribosomal RNAM590951465ena1535
20218Clostridium limosum 16S ribosomal RNAM590961458ena1536
425Clostridium leptum 16S rRNA gene, strain DSM 753TAJ3052381505ena428125

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Clostridium] leptum DSM 753 DSM 753GCA_000154345scaffoldncbi428125
66792[Clostridium] leptum DSM 753 DSM 753GCA_002556665contigncbi428125
66792[Clostridium] leptum DSM 753428125.17wgspatric428125
66792Clostridium leptum DSM 753428125.8wgspatric428125
66792Clostridium leptum DSM 753641380427draftimg428125
66792Clostridium leptum DSM 7532835065648draftimg428125
66792Xanthomonas oryzae pv. oryzicola YM15GCA_001021915completepatric129394
66792Lactobacillus acidophilus QAULAN51GCA_022509485scaffoldpatric1579

GC content

  • @ref: 425
  • GC-content: 51

External links

@ref: 425

culture collection no.: DSM 753, ATCC 29065, VPI T7-24-1

straininfo link

@refpassport
20218http://www.straininfo.net/strains/156956
20218http://www.straininfo.net/strains/106367

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26474980Caproiciproducens galactitolivorans gen. nov., sp. nov., a bacterium capable of producing caproic acid from galactitol, isolated from a wastewater treatment plant.Kim BC, Seung Jeon B, Kim S, Kim H, Um Y, Sang BIInt J Syst Evol Microbiol10.1099/ijsem.0.0006652015Bacterial Typing Techniques, Base Composition, Caproates/*metabolism, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Galactitol/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Water/*microbiologyMetabolism
Pathogenicity27018325Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells.Altamimi M, Abdelhay O, Rastall RAAnaerobe10.1016/j.anaerobe.2016.03.0102016Bacterial Adhesion/*drug effects, Bacteroides/drug effects/physiology, Bacteroides fragilis/drug effects/physiology, Bifidobacterium/drug effects/physiology, Clostridium/drug effects/physiology, Faecalibacterium/drug effects/physiology, Gastrointestinal Microbiome/*drug effects, HT29 Cells, Humans, Lactobacillus casei/drug effects/physiology, Mucins/metabolism, Oligosaccharides/*pharmacology, Prebiotics/*analysis, Species SpecificityPhylogeny
Phylogeny32584751Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens.Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FRInt J Syst Evol Microbiol10.1099/ijsem.0.0042832020Bacteria, Anaerobic/classification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Caproates/*metabolism, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
425Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 753)https://www.dsmz.de/collection/catalogue/details/culture/DSM-753
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)