Strain identifier

BacDive ID: 2605

Type strain: Yes

Species: Asaccharospora irregularis

Strain Designation: 6VI

Strain history: ATCC 25756 <-- L. DS. Smith VPI 4428 <-- A. R. Prévot 6 VI.

NCBI tax ID(s): 1121321 (strain), 29359 (species)

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General

@ref: 1180

BacDive-ID: 2605

DSM-Number: 2635

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive

description: Asaccharospora irregularis 6VI is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

NCBI tax idMatching level
1121321strain
29359species

strain history

@refhistory
1180<- ATCC <- L.DS. Smith, VPI 4428 <- A.R. Prévot, 6VI
67770ATCC 25756 <-- L. DS. Smith VPI 4428 <-- A. R. Prévot 6 VI.

doi: 10.13145/bacdive2605.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Asaccharospora
  • species: Asaccharospora irregularis
  • full scientific name: Asaccharospora irregularis (Choukévitch 1911) Gerritsen et al. 2014

  • synonyms

    @refsynonym
    20215Clostridium irregulare
    20215Bacillus irregularis
    20215Clostridium irregularis

@ref: 1180

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Asaccharospora

species: Asaccharospora irregularis

full scientific name: Asaccharospora irregularis (Choukévitch 1911) Gerritsen et al. 2014

strain designation: 6VI

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 1180
  • name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/78
  • composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

@refgrowthtypetemperaturerange
1180positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1180anaerobe
69480anaerobe99.999

spore formation

@refspore formationconfidence
69481yes99
69480yes98.764

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_13408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2;97_8260;98_10144;99_13408&stattab=map
  • Last taxonomy: Asaccharospora irregularis subclade
  • 16S sequence: AB971797
  • Sequence Identity:
  • Total samples: 376
  • soil counts: 46
  • aquatic counts: 50
  • animal counts: 274
  • plant counts: 6

Safety information

risk assessment

  • @ref: 1180
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
1180Clostridium irregulare 16S rRNA gene, strain DSM 2635X734471495ena1121321
67770Asaccharospora irregularis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1425AB9717971462ena1121321

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Asaccharospora irregularis DSM 26351121321.3wgspatric1121321
66792Asaccharospora irregularis DSM 26352634166349draftimg1121321
67770Asaccharospora irregularis DSM 2635GCA_900129815scaffoldncbi1121321

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
motileyes81.969no
flagellatedno58.893no
gram-positiveyes89.134no
anaerobicyes98.901no
aerobicno97.951yes
halophileno90.525no
spore-formingyes93.374no
glucose-utilyes81.99no
thermophileno91.7yes
glucose-fermentyes60.717no

External links

@ref: 1180

culture collection no.: DSM 2635, ATCC 25756, BCRC 14528, JCM 1425, NCIMB 11830, VPI 4428

straininfo link

  • @ref: 72136
  • straininfo: 38655

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1180Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2635)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2635
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72136Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38655.1StrainInfo: A central database for resolving microbial strain identifiers