Strain identifier
BacDive ID: 2587
Type strain: 
Species: Clostridium formicaceticum
Strain Designation: A1
Strain history: <- J. R. Andreesen, Universität Göttingen, Germany; A1 <- J. R. Andreesen {1966}
NCBI tax ID(s): 1497 (species)
version 8.1 (current version)
General
@ref: 2068
BacDive-ID: 2587
DSM-Number: 92
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium formicaceticum A1 is an anaerobe, mesophilic bacterium that was isolated from sewage plant.
NCBI tax id
- NCBI tax id: 1497
- Matching level: species
strain history
- @ref: 2068
- history: <- J. R. Andreesen, Universität Göttingen, Germany; A1 <- J. R. Andreesen {1966}
doi: 10.13145/bacdive2587.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium formicaceticum
- full scientific name: Clostridium formicaceticum corrig. Andreesen et al. 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium formicoaceticum
@ref: 2068
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium formicaceticum
full scientific name: Clostridium formicaceticum Andreesen et al. 1970
strain designation: A1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2068
- name: CLOSTRIDIUM FORMICOACETICUM MEDIUM (DSMZ Medium 14)
- growth: yes
- link: https://mediadive.dsmz.de/medium/14
- composition: Name: CLOSTRIDIUM FORMICACETICUM MEDIUM (DSMZ Medium 14) Composition: Agar 14.8368 g/l (optional) K2HPO4 9.8912 g/l Yeast extract 4.9456 g/l D-Fructose 4.9456 g/l Na2CO3 0.98912 g/l Na-thioglycolate 0.74184 g/l Na2-EDTA 0.0049456 g/l H3BO3 0.00296736 g/l CoCl2 x 6 H2O 0.00197824 g/l FeSO4 x 7 H2O 0.00197824 g/l ZnSO4 x 7 H2O 0.00098912 g/l Pyridoxine hydrochloride 0.00098912 g/l Sodium resazurin 0.00049456 g/l Na2MoO4 x 2 H2O 0.000296736 g/l MnCl2 x 4 H2O 0.000296736 g/l NiCl2 x 6 H2O 0.000197824 g/l CuCl2 x 2 H2O 9.8912e-05 g/l Distilled water
culture temp
- @ref: 2068
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2068
- oxygen tolerance: anaerobe
compound production
- @ref: 2068
- compound: formate dehydrogenase
Isolation, sampling and environmental information
isolation
- @ref: 2068
- sample type: sewage plant
- geographic location: Göttingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Water treatment plant
taxonmaps
- @ref: 69479
- File name: preview.99_1119.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_191;96_654;97_757;98_876;99_1119&stattab=map
- Last taxonomy: Clostridium formicaceticum
- 16S sequence: HF679208
- Sequence Identity:
- Total samples: 2892
- soil counts: 347
- aquatic counts: 1320
- animal counts: 1149
- plant counts: 76
Safety information
risk assessment
- @ref: 2068
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium formicaceticum strain ATCC 27076 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | DQ834679 | 422 | ena | 1497 |
| 20218 | Clostridium formicaceticum 16S rRNA gene, strain DSM 92 | X77836 | 1521 | ena | 1497 |
| 2068 | Clostridium formicaceticum partial 16S rRNA gene, type strain DSM 92T | HF679208 | 1515 | ena | 1497 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium formicaceticum ATCC 27076 | GCA_001854185 | complete | ncbi | 1497 |
| 66792 | Clostridium formicaceticum strain ATCC 27076 | 1497.3 | complete | patric | 1497 |
| 66792 | Clostridium formicaceticum A1 | 2639762535 | draft | img | 1497 |
| 66792 | Clostridium formicaceticum ATCC 27076 | 2718217923 | complete | img | 1497 |
GC content
- @ref: 2068
- GC-content: 34.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 59.559 | no |
| gram-positive | yes | 56.521 | no |
| anaerobic | yes | 98.223 | yes |
| aerobic | no | 96.808 | yes |
| halophile | no | 86.344 | no |
| spore-forming | yes | 96.496 | no |
| thermophile | no | 98.793 | yes |
| glucose-util | yes | 86.634 | no |
| motile | yes | 85.775 | no |
| glucose-ferment | no | 53.087 | no |
External links
@ref: 2068
culture collection no.: DSM 92, ATCC 27076
straininfo link
- @ref: 72120
- straininfo: 38794
literature
- topic: Genetics
- Pubmed-ID: 28546497
- title: Complete Genome Sequence of the Autotrophic Acetogen Clostridium formicaceticum DSM 92(T) Using Nanopore and Illumina Sequencing Data.
- authors: Karl MM, Poehlein A, Bengelsdorf FR, Daniel R, Durre P
- journal: Genome Announc
- DOI: 10.1128/genomeA.00423-17
- year: 2017
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2068 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 92) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-92 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72120 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38794.1 | StrainInfo: A central database for resolving microbial strain identifiers |