Strain identifier
BacDive ID: 2586
Type strain: 
Species: Clostridium felsineum
Strain Designation: 541
Strain history: ATCC 17788 <-- L. S. McClung 541.
NCBI tax ID(s): 1121310 (strain), 36839 (species)
version 9.3 (current version)
General
@ref: 451
BacDive-ID: 2586
DSM-Number: 794
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic
description: Clostridium felsineum 541 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121310 | strain |
| 36839 | species |
strain history
| @ref | history |
|---|---|
| 451 | <- ATCC <- L. S. McClung, University of California, San Francisco, USA; 541 |
| 67770 | ATCC 17788 <-- L. S. McClung 541. |
doi: 10.13145/bacdive2586.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium felsineum
- full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939 (Approved Lists 1980)
synonyms
@ref synonym 20215 Clostridium aurantibutyricum 20215 Clostridium roseum 20215 Bacillus felsineus
@ref: 451
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium felsineum
full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939
strain designation: 541
type strain: yes
Culture and growth conditions
culture medium
- @ref: 451
- name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411)
- growth: yes
- link: https://mediadive.dsmz.de/medium/411
- composition: Name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411) Composition: Potato 200.0 g/l D-Glucose 6.0 g/l CaCO3 2.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 451 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 451 | anaerobe | |
| 125439 | facultative anaerobe | 99 |
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 91.6
Safety information
risk assessment
- @ref: 451
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clostridium felsineum 16S rRNA gene, strain DSM 794 | X77851 | 1501 | nuccore | 36839 |
| 451 | Clostridium felsineum DSM 794 16S ribosomal RNA gene, partial sequence | AF270502 | 1439 | nuccore | 36839 |
| 67770 | Clostridium felsineum NCIMB 10690 16S ribosomal RNA gene, partial sequence | AF270501 | 1439 | nuccore | 36839 |
| 67770 | Clostridium felsineum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1399 | LC036316 | 1467 | nuccore | 36839 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium felsineum DSM 794 strain DSM 794 | 1121310.4 | wgs | patric | 1121310 |
| 66792 | Clostridium felsineum 541 | 2703719316 | draft | img | 36839 |
| 67770 | Clostridium felsineum DSM 794 | GCA_002006355 | complete | ncbi | 1121310 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 451 | 28.0-29.0 | |
| 451 | 26.0 | |
| 67770 | 26 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 65.559 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 86.864 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 75.24 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.146 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.616 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 80.919 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 91.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 84 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 84.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 99 |
External links
@ref: 451
culture collection no.: DSM 794, ATCC 17788, NCIMB 10690, JCM 1399, BCRC 14489, KCTC 5072, NRRL B-41126
straininfo link
- @ref: 72119
- straininfo: 11832
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11411721 | Clostridium felsineum and Clostridium acetobutylicum are two distinct species that are phylogenetically closely related. | Tamburini E, Daly S, Steiner U, Vandini C, Mastromei G | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-963 | 2001 | Clostridium/*classification/*genetics, DNA, Ribosomal/*genetics, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/*genetics | Genetics |
| Phylogeny | 36269567 | Reclassification of Clostridium aurantibutyricum Hellinger 1944 and Clostridium roseum (ex McCoy and McClung 1935) Cato et al. 1988. | Schoch T, Hofele F, Odeh H, Winter LM, Stoferle S, Karl M, Bengelsdorf F, Poehlein A, Daniel R, Durre P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005589 | 2022 | RNA, Ribosomal, 16S/genetics, DNA, Bacterial/genetics, Sequence Analysis, DNA, Bacterial Typing Techniques, Phylogeny, Base Composition, *Fatty Acids/chemistry, *Nucleotides | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 451 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 794) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-794 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 72119 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11832.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |