Strain identifier

BacDive ID: 2586

Type strain: Yes

Species: Clostridium felsineum

Strain Designation: 541

Strain history: ATCC 17788 <-- L. S. McClung 541.

NCBI tax ID(s): 1121310 (strain), 36839 (species)

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General

@ref: 451

BacDive-ID: 2586

DSM-Number: 794

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Clostridium felsineum 541 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

NCBI tax idMatching level
1121310strain
36839species

strain history

@refhistory
451<- ATCC <- L. S. McClung, University of California, San Francisco, USA; 541
67770ATCC 17788 <-- L. S. McClung 541.

doi: 10.13145/bacdive2586.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium felsineum
  • full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus felsineus
    20215Clostridium aurantibutyricum
    20215Clostridium roseum

@ref: 451

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium felsineum

full scientific name: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939

strain designation: 541

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.335
69480100positive

Culture and growth conditions

culture medium

  • @ref: 451
  • name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/411
  • composition: Name: CLOSTRIDIUM ACETOBUTYLICUM MEDIUM (DSMZ Medium 411) Composition: Potato 200.0 g/l D-Glucose 6.0 g/l CaCO3 2.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
451positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
451anaerobe
69480anaerobe99.057

spore formation

@refspore formationconfidence
69481yes92
69480yes100

Safety information

risk assessment

  • @ref: 451
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium felsineum 16S rRNA gene, strain DSM 794X778511501ena36839
451Clostridium felsineum DSM 794 16S ribosomal RNA gene, partial sequenceAF2705021439ena36839
67770Clostridium felsineum NCIMB 10690 16S ribosomal RNA gene, partial sequenceAF2705011439ena36839
67770Clostridium felsineum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1399LC0363161467ena36839

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium felsineum DSM 794 strain DSM 7941121310.4wgspatric1121310
66792Clostridium felsineum 5412703719316draftimg36839
67770Clostridium felsineum DSM 794GCA_002006355completencbi1121310

GC content

@refGC-contentmethod
45128.0-29.0
45126.0
6777026thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes92no
motileyes77.945no
flagellatedyes63.12no
gram-positiveyes81.917no
anaerobicyes95.944no
aerobicno96.61yes
halophileno93.724no
spore-formingyes96.426no
thermophileno99.4no
glucose-utilyes89.757no
glucose-fermentyes64.601no

External links

@ref: 451

culture collection no.: DSM 794, ATCC 17788, NCIMB 10690, JCM 1399, BCRC 14489, KCTC 5072, NRRL B-41126

straininfo link

  • @ref: 72119
  • straininfo: 11832

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11411721Clostridium felsineum and Clostridium acetobutylicum are two distinct species that are phylogenetically closely related.Tamburini E, Daly S, Steiner U, Vandini C, Mastromei GInt J Syst Evol Microbiol10.1099/00207713-51-3-9632001Clostridium/*classification/*genetics, DNA, Ribosomal/*genetics, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/*geneticsGenetics
Phylogeny36269567Reclassification of Clostridium aurantibutyricum Hellinger 1944 and Clostridium roseum (ex McCoy and McClung 1935) Cato et al. 1988.Schoch T, Hofele F, Odeh H, Winter LM, Stoferle S, Karl M, Bengelsdorf F, Poehlein A, Daniel R, Durre PInt J Syst Evol Microbiol10.1099/ijsem.0.0055892022RNA, Ribosomal, 16S/genetics, DNA, Bacterial/genetics, Sequence Analysis, DNA, Bacterial Typing Techniques, Phylogeny, Base Composition, *Fatty Acids/chemistry, *NucleotidesTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
451Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 794)https://www.dsmz.de/collection/catalogue/details/culture/DSM-794
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72119Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11832.1StrainInfo: A central database for resolving microbial strain identifiers