Strain identifier

BacDive ID: 2565

Type strain: Yes

Species: Clostridium carnis

Strain Designation: 10038

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10038 <- ATCC <- L.D.S. Smith: strain VPI 1635B

NCBI tax ID(s): 1530 (species)

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General

@ref: 624

BacDive-ID: 2565

DSM-Number: 1293

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium carnis 10038 is an anaerobe, mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1530
  • Matching level: species

strain history

@refhistory
624<- ATCC <- L.DS. Smith, VPI 1635 B
67770ATCC 25777 <-- L. DS. Smith VPI 1635B.
117188CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10038 <- ATCC <- L.D.S. Smith: strain VPI 1635B

doi: 10.13145/bacdive2565.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium carnis
  • full scientific name: Clostridium carnis (Klein 1904) Spray 1939 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus carnis
    20215Plectridium carnis

@ref: 624

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium carnis

full scientific name: Clostridium carnis (Klein 1904) Spray 1939

strain designation: 10038

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
624CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
37171MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
117188CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
624positivegrowth37mesophilic
37171positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 624
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_10486.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_220;96_5190;97_6264;98_7814;99_10486&stattab=map
  • Last taxonomy: Phascolarctobacterium faecium
  • 16S sequence: LC071786
  • Sequence Identity:
  • Total samples: 153693
  • soil counts: 1819
  • aquatic counts: 7831
  • animal counts: 143422
  • plant counts: 621

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
6242Risk group (German classification)
1171882Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Clostridium carnis strain ATCC 25777 16S ribosomal RNA gene, partial sequenceHM245935580ena1530
20218Clostridium carnis genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequenceAB040718346ena1530
20218Clostridium carnis genes for 16S rRNA, 16S-23S rRNA spacer region (rrn2), 23S rRNA, partial sequenceAB040719538ena1530
20218Clostridium carnis genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequenceAB040720556ena1530
20218Clostridium carnis genes for 16S rRNA, tRNA-Ile, 23S rRNA, partial and complete sequenceAB040721594ena1530
624Clostridium carnis strain ATCC 25777 16S ribosomal RNA gene, partial sequenceM590911455ena1530
67770Clostridium carnis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1393LC0717861459ena1530

Genome sequences

  • @ref: 66792
  • description: Clostridium carnis DSM 1293
  • accession: 2928353371
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1530

GC content

@refGC-contentmethod
62428.0
6777028thermal denaturation, midpoint method (Tm)

External links

@ref: 624

culture collection no.: DSM 1293, ATCC 25777, CDC KA 84, NCIB 10670, VPI 1635 B, JCM 1393, CDC KA84, CIP 104315, NCIMB 10670, NCTC 13036, VPI 1635B

straininfo link

  • @ref: 72098
  • straininfo: 38664

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
624Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1293)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1293
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37171Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16210
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72098Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38664.1StrainInfo: A central database for resolving microbial strain identifiers
117188Curators of the CIPCollection of Institut Pasteur (CIP 104315)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104315