Strain identifier
BacDive ID: 2552
Type strain: 
Species: Clostridium beijerinckii
Strain Designation: 34, Ng 34
Strain history: ATCC 14949 <-- H. Ng 34.
NCBI tax ID(s): 1520 (species)
version 8.1 (current version)
General
@ref: 2044
BacDive-ID: 2552
DSM-Number: 53
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium beijerinckii 34 is an anaerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1520
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2044 | <- G. Gottschalk, Universität Göttingen, Germany; ATCC 14949 <- ATCC <- H. Ng, University of California, Davis; 34 (Clostridium rubrum) |
| 67770 | ATCC 14949 <-- H. Ng 34. |
doi: 10.13145/bacdive2552.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium beijerinckii
- full scientific name: Clostridium beijerinckii Donker 1926 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium diolis
@ref: 2044
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium beijerinckii
full scientific name: Clostridium beijerinckii Donker 1926 emend. Keis et al. 2001
strain designation: 34, Ng 34
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2044 | CLOSTRIDIUM SP. MEDIUM (DSMZ Medium 54b) | yes | https://mediadive.dsmz.de/medium/54b | Name: CLOSTRIDIUM SP. MEDIUM (DSMZ Medium 54b) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water |
| 2044 | PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) | yes | https://mediadive.dsmz.de/medium/104c | Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 2044 | CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) | yes | https://mediadive.dsmz.de/medium/110a | Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2044 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 2044
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2044 | soil | California | USA | USA | North America |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_378.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_149;97_160;98_179;99_378&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: AB640693
- Sequence Identity:
- Total samples: 10335
- soil counts: 1985
- aquatic counts: 1977
- animal counts: 5931
- plant counts: 442
Safety information
risk assessment
- @ref: 2044
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Clostridium beijerinckii gene for 16S ribosomal RNA, partial sequence, strain: JCM 6287
- accession: AB640693
- length: 1473
- database: ena
- NCBI tax ID: 1520
Genome sequences
- @ref: 67770
- description: Clostridium beijerinckii DSM 53
- accession: GCA_002006205
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1520
GC content
- @ref: 2044
- GC-content: 28.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 71.072 | no |
| gram-positive | yes | 56.879 | no |
| anaerobic | yes | 97.019 | no |
| aerobic | no | 97.563 | no |
| halophile | no | 97.73 | no |
| spore-forming | yes | 94.975 | no |
| glucose-util | yes | 92.714 | no |
| thermophile | no | 98.977 | no |
| motile | yes | 81.108 | no |
| glucose-ferment | yes | 67.755 | no |
External links
@ref: 2044
culture collection no.: DSM 53, ATCC 14949, NCIMB 9503, JCM 6287
straininfo link
- @ref: 72085
- straininfo: 307569
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2044 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 53) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-53 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72085 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID307569.1 | StrainInfo: A central database for resolving microbial strain identifiers |