Strain identifier

BacDive ID: 255

Type strain: Yes

Species: Aeromonas veronii

Strain Designation: 1169-83

Strain history: CIP <- 1990, ATCC <- CDC: strain 1169-83

NCBI tax ID(s): 654 (species)

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General

@ref: 3137

BacDive-ID: 255

DSM-Number: 7386

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, human pathogen

description: Aeromonas veronii 1169-83 is an aerobe, mesophilic, motile human pathogen that was isolated from sputum of drowning victim.

NCBI tax id

  • NCBI tax id: 654
  • Matching level: species

strain history

@refhistory
3137<- ATCC <- CDC; 1169-83
67770F. W. Hickman-Brenner CDC 1169-83.
123820CIP <- 1990, ATCC <- CDC: strain 1169-83

doi: 10.13145/bacdive255.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas veronii
  • full scientific name: Aeromonas veronii Hickman-Brenner et al. 1988

  • synonyms

    • @ref: 20215
    • synonym: Aeromonas culicicola

@ref: 3137

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas veronii

full scientific name: Aeromonas veronii Hickman-Brenner et al. 1988

strain designation: 1169-83

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.247
6948099.995negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3137REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
34263MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123820CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
123820CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3137positivegrowth37mesophilic
34263positivegrowth30mesophilic
48966positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48966
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.976

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole+
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • @reffatty acidpercentageECL
    48966C12:011.412
    48966C13:00.413
    48966C14:04.214
    48966C15:00.815
    48966C16:010.316
    48966C12:0 3OH0.513.455
    48966C13:0 3OH/C15:1 i I/H1.114.469
    48966C13:0 ISO 2OH0.913.814
    48966C14:0 3OH/C16:1 ISO I16.115.485
    48966C14:1 ISO E0.513.388
    48966C16:0 anteiso0.615.717
    48966C16:0 N alcohol1.715.549
    48966C16:1 ω7c29.215.819
    48966C16:1 ω7c alcohol5.215.386
    48966C17:0 10-methyl3.117.41
    48966C17:1 ω8c0.916.792
    48966C18:1 ω7c /12t/9t917.824
    48966C18:2 ω6,9c/C18:0 ANTE2.417.724
    48966Unidentified0.615.279
    48966Unidentified1.317.328
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    48966C12:06.612
    48966C14:06.514
    48966C16:023.616
    48966C18:00.618
    48966C14:0 3OH/C16:1 ISO I6.915.485
    48966C15:0 ANTEISO1.214.711
    48966C15:0 ISO 3OH516.135
    48966C16:1 ω7c31.915.819
    48966C18:1 ω7c /12t/9t8.817.824
    48966C18:1 ω9c1.117.769
    48966Unidentified1.912.266
    48966Unidentified1.914.281
    48966Unidentified3.516.259
    48966unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3137+--++---+++++---+---+/-

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
3137+++--++++-++++++-++-+
3137+++--++++-++++++-++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
3137sputum of drowning victimMichiganUSAUSANorth America
48966Human sputum,drowning victim1983
67770Sputum
123820Human, Sputum

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_537.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X74684
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 68
  • aquatic counts: 1144
  • animal counts: 488
  • plant counts: 50

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
3137yesyes2Risk group (German classification)
1238201Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas veronii 16S rRNAD11176217ena197701
20218Aeromonas veronii 16S rRNAD11225214ena197701
20218Aeromonas veronii 16S rRNAD11274200ena654
20218Aeromonas veronii bv. veronii 16S rRNA gene, strain ATCC 35624X604141503ena197701
20218A.veronii (ATCC 35624T) gene for 16S ribosomal RNAX746841460ena197701
20218Aeromonas veronii bv. veronii strain CECT 4257 16S ribosomal RNA gene, partial sequenceJX014443151ena197701
20218Aeromonas veronii gene for 16S rRNA, partial sequence, strain: JCM 7375AB4729501415ena654

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas veronii bv. veronii ATCC 35624GCA_018359905contigncbi197701
66792Aeromonas veronii bv. veronii CECT 4257197701.3wgspatric197701
66792Aeromonas veronii bv. veronii strain ATCC 35624197701.9wgspatric197701
66792Aeromonas veronii bv. veronii strain CCM 4359197701.4wgspatric197701
66792Aeromonas veronii bv. veronii CECT 42572639762903draftimg197701
66792Aeromonas veronii CCM 43592922032837draftimg654
67770Aeromonas veronii bv. veronii CECT 4257GCA_000820225scaffoldncbi197701
67770Aeromonas veronii bv. veronii CCM 4359GCA_001908535contigncbi197701

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.419no
gram-positiveno99.044no
anaerobicno94.941yes
aerobicyes82.113yes
halophileno88.727no
spore-formingno95.761no
glucose-utilyes91.569yes
flagellatedyes92.356no
thermophileno99.273no
glucose-fermentyes89.509yes

External links

@ref: 3137

culture collection no.: DSM 7386, ATCC 35624, CDC 1169-83, CECT 4275, CCUG 27821, JCM 7375, LMG 9075, CCM 4359, CECT 4257, CIP 103438, GIFU 13580, GTC 00706, LMG 18296, NCIMB 13015

straininfo link

  • @ref: 69937
  • straininfo: 92097

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny3584425Aeromonas veronii, a new ornithine decarboxylase-positive species that may cause diarrhea.Hickman-Brenner FW, MacDonald KL, Steigerwalt AG, Fanning GR, Brenner DJ, Farmer JJ 3rdJ Clin Microbiol10.1128/jcm.25.5.900-906.19871987Adult, Aeromonas/*classification/enzymology/genetics/pathogenicity, Aged, Aged, 80 and over, Child, DNA, Bacterial/analysis, Diarrhea/*microbiology, Feces/microbiology, Humans, Male, Nucleic Acid Hybridization, Ornithine Decarboxylase/analysis, Respiratory System/microbiology, Terminology as Topic, Wounds and Injuries/microbiologyPathogenicity
Phylogeny11518320New DNA-DNA hybridization and phenotypic data on the species Aeromonas ichthiosmia and Aeromonas allosaccharophila: A. ichthiosmia Schubert et al. 1990 is a later synonym of A. veronii Hickman-Brenner et al. 1987.Huys G, Kampfer P, Swings JSyst Appl Microbiol10.1078/0723-2020-000382001Aeromonas/*classification/*genetics/metabolism/physiology, Bacterial Typing Techniques/*methods, DNA, Bacterial/*analysis, Nucleic Acid Hybridization, PhenotypePhenotype
Phylogeny13130026Taxonomic study of sucrose-positive Aeromonas jandaei-like isolates from faeces, water and eels: emendation of A. jandaei Carnahan et al. 1992.Esteve C, Valera L, Gutierrez C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.02504-02003Aeromonas/*classification/genetics/*isolation & purification/metabolism, Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Eels/*microbiology, Feces/microbiology, Fresh Water/*microbiology, Phenotype, Sucrose/metabolism, VirulenceMetabolism
32252334Aeromonas veronii Infection in Commercial Freshwater Fish: A Potential Threat to Public Health.Li T, Raza SHA, Yang B, Sun Y, Wang G, Sun W, Qian A, Wang C, Kang Y, Shan XAnimals (Basel)10.3390/ani100406082020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3137Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7386)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7386
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34263Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15236
48966Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27821)https://www.ccug.se/strain?id=27821
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69937Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92097.1StrainInfo: A central database for resolving microbial strain identifiers
123820Curators of the CIPCollection of Institut Pasteur (CIP 103438)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103438